README.md
In nwisn/cmdnet: An algorithm for identification of preserved networks across multiple datasets
About
As more scientific data is shared, better tools are needed for integrating multiple public datasets. Network analysis tools are important in analysis of high-dimensional data such as genomics, but difficulties arise when faced with multiple sources of data due to large variability across datasets. This algorithm, cmdnet, attempts to understand this variability by computing correlation matrix distance (CMD) statistics for an ensemble of networks. It can be used to quantify overall and node-specific differences between network datasets, and rank nodes by consistency of edge weights. In this way, it can also be used as a noise reduction tool by identifying highly variable nodes for removal.
Vignette
There is a vignette illustrating the use of cmdnet.
Installation
To install, first install the devtools package, and then type:
install_github("nwisn/cmdnet").
nwisn/cmdnet documentation built on May 30, 2019, 12:47 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
About
As more scientific data is shared, better tools are needed for integrating multiple public datasets. Network analysis tools are important in analysis of high-dimensional data such as genomics, but difficulties arise when faced with multiple sources of data due to large variability across datasets. This algorithm, cmdnet, attempts to understand this variability by computing correlation matrix distance (CMD) statistics for an ensemble of networks. It can be used to quantify overall and node-specific differences between network datasets, and rank nodes by consistency of edge weights. In this way, it can also be used as a noise reduction tool by identifying highly variable nodes for removal.
Vignette
There is a vignette illustrating the use of cmdnet.
Installation
To install, first install the devtools package, and then type:
install_github("nwisn/cmdnet").
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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