Man pages for nygenome/SCANVIS
SCANVIS - a tool for SCoring, ANnotating and VISualizing splice junctions

GBMlist of 3 TCGA glioblastoma samples, parts thereof, outputs...
gbm3part of a TCGA glioblastoma sample from STAR alignment SJ.tab...
gbm3.vcfa toy set of 6 variants that pair up with the gbm3 data...
gen19parts of the annotation object created by the...
gene2roigene name/s to region of interest
IR2MatIRanges to Matrix
ls_urllist files available at annotation/gencode url
LUADlist of 3 TCGA lung adenocarcinoma samples, parts thereof,...
LUSClist of 3 TCGA lung squamous cell carcinoma samples, parts...
SCANVISannotationassembles annotation from gtf file into SCANVISreadable...
SCANVISexamplesData for running SCANVISexamples
SCANVISlinkvarmaps variants to SCANVISscored junctions
SCANVISmergemerges multiple SCANVISsamples
SCANVIS-packageSCANVIS - a tool for SCoring, ANnotating and VISualizing...
SCANVISreadSTARupload SJ.tab STAR file in SCANVISuse
SCANVISscanSCore and ANnotate splice junctions
SCANVISvisuala sashimi-style visualization tool
nygenome/SCANVIS documentation built on July 19, 2019, 4:57 a.m.