SCANVIS: SCANVIS - a tool for SCoring, ANnotating and VISualizing splice junctions

Converts gene name/s to genomic coordinates using gene annotation file from SCANVISannotation

1	gene2roi(g,gen)

`g`	vector of one or more gene names or gene ids in the same chromosome
`gen`	gene annotation object as output by SCANIVS.annotation

This function is called upon by SCANVISlinkvar and SCANVISvisual

chr, start and end of the union of genomic intervals that overlap the genes in g

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data(SCANVISexamples)
g=c('TDRD6','PLA2G7')
roi=gene2roi(g,gen19)

nygenome/SCANVIS documentation built on July 19, 2019, 4:57 a.m.

nygenome/SCANVIS index

README.md

Note that we can't provide technical support on individual packages. You should contact the package authors for that.

Description