example_TCR_df: Sample TCR sequence data
In obrzts/BLscore: Clustering Similar TCRs Likely Recognizing Same Epitope
example_TCR_df R Documentation
Sample TCR sequence data
Description
An exemplary dataset containing junction sequences and V and J genes of 1000
TCRs randomly sampled from VDJdb database.
Usage
example_TCR_df
Format
A data frame with 2000 rows and 6 variables:
- v_beta
beta chain V gene
- j_beta
beta chain J gene
- v_alpha
alpha chain J gene
- j_alpha
alpha chain J gene
- junction_alpha
beta chain junction sequence
- junction_beta
alpha chain junction sequence
- id
unique id
Source
References
Dmitry V Bagaev, Renske M A Vroomans, Jerome Samir, Ulrik Stervbo,
Cristina Rius, Garry Dolton, Alexander Greenshields-Watson, Meriem Attaf,
Evgeny S Egorov, Ivan V Zvyagin, Nina Babel, David K Cole, Andrew J Godkin,
Andrew K Sewell, Can Kesmir, Dmitriy M Chudakov, Fabio Luciani, Mikhail Shugay,
VDJdb in 2019: database extension, new analysis infrastructure and a T-cell
receptor motif compendium. Nucleic Acids Research, gkz874, 2019
obrzts/BLscore documentation built on Nov. 21, 2024, 4:28 a.m.
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| example_TCR_df | R Documentation |
Sample TCR sequence data
Description
An exemplary dataset containing junction sequences and V and J genes of 1000 TCRs randomly sampled from VDJdb database.
Usage
example_TCR_df
Format
A data frame with 2000 rows and 6 variables:
- v_beta
beta chain V gene
- j_beta
beta chain J gene
- v_alpha
alpha chain J gene
- j_alpha
alpha chain J gene
- junction_alpha
beta chain junction sequence
- junction_beta
alpha chain junction sequence
- id
unique id
Source
References
Dmitry V Bagaev, Renske M A Vroomans, Jerome Samir, Ulrik Stervbo, Cristina Rius, Garry Dolton, Alexander Greenshields-Watson, Meriem Attaf, Evgeny S Egorov, Ivan V Zvyagin, Nina Babel, David K Cole, Andrew J Godkin, Andrew K Sewell, Can Kesmir, Dmitriy M Chudakov, Fabio Luciani, Mikhail Shugay, VDJdb in 2019: database extension, new analysis infrastructure and a T-cell receptor motif compendium. Nucleic Acids Research, gkz874, 2019
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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