misc/about_deaths_indicators.md

In ocelhay/como: A Web Application of the CoMo COVID-19 Model

In the box: total_covid_deaths for the end date.

with the following definition:

total_covid_deaths = deaths_from_covid (= cinc_mort_all) + deaths_with_covid (= nat_deaths_inf)

with:

all deaths due to covid19 disease - reported + unreported

`cinc_mort_all<-cinc_mort_1+cinc_mort_2+cinc_mort_3+cinc_mort_4+cinc_mort_5+cinc_mort_6+
  cinc_mort_7+cinc_mort_8+cinc_mort_9+cinc_mort_10+cinc_mort_11+cinc_mort_121+cinc_mort_131+cinc_mort_141`

all deaths of infected with sars-cov-2 virus - reported + unreported

nat_deaths_inf <- round(base_mort_E11 + base_mort_I11 + base_mort_CL11 + base_mort_X11 + 
                          base_mort_ER11 + base_mort_EV11+  base_mort_EVR11+   
                          base_mort_QE11 + base_mort_QI11 + base_mort_QC11 +  
                          base_mort_QEV11 + base_mort_QER11 + base_mort_QEVR11 + base_mort_Z1+
                          base_mort_H1+base_mort_HC11+base_mort_ICU1+base_mort_ICUC1+base_mort_ICUCV1+
                          base_mort_Vent1+base_mort_VentC1+base_mort_HCICU11+base_mort_HCV11)

In the plot "Baseline Cumlative Deaths": cum_mortality

cum_mortality = round(rowSums(out_mat[,(CMindex+1)]))

ocelhay/como documentation built on April 18, 2023, 10:29 a.m.