taxonInfo | R Documentation |
taxonInfo
taxonInfo( taxon, request = NULL, ..., file = NULL, return = TRUE, overwrite = FALSE, memoised = FALSE )
taxon |
can either be Taxon ID, Taxon NCBI ID, or one of its string identifiers: scientific name, common name, abbreviation. It is recommended to use Taxon ID for efficiency. Please note, that not all taxa have all the possible identifiers available. Use the
If a vector of length>1 is provided return all matching taxon
objects similar to | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
request |
character. If NULL retrieves the dataset object. Otherwise
If a vector of length>1 is provided return all matching taxon
objects similar to | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
... |
Use if the specified request has additional parameters. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
file |
Character. File path. If provided, response will be saved to file | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
return |
Logical. If the response should be returned. Set to false when you only want to save a file | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
overwrite |
Logical. If TRUE, existing files will be overwritten. If FALSE a warning will be thrown and no action is taken. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
memoised |
Logical. If TRUE a memoised version of the function will be
used which is faster for repeated requests. Use |
a list
taxonInfo('human') taxonInfo('human', request = 'datasets') taxonInfo('human',request = 'phenotypes') taxonInfo('human',request = 'phenoCandidateGenes', phenotypes = c('http://purl.obolibrary.org/obo/DOID_11934', 'http://purl.obolibrary.org/obo/DOID_3119')) taxonInfo('human', request= 'gene',gene='DYRK1A') taxonInfo('human', request= 'geneLocation',gene='DYRK1A')
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