get_ontology: Read ontology from OBO file into R

In oganm/ontologyIndexOgfork: Functions for Reading Ontologies into R

Description

Read ontology from OBO file into R

Usage

get_ontology(file, propagate_relationships = "is_a",
  extract_tags = "minimal")

get_OBO(file, propagate_relationships = "is_a", extract_tags = "minimal")

Arguments

file	File path of OBO formatted file.
propagate_relationships	Character vector of relations
extract_tags	Character value: either "minimal" or "everything", determining whether to extract only the properties of terms which are required to run functions in the package - i.e. "id", "name", "parents", "children" and "ancestors" - or extract all properties provided in the file. Defaults to "minimal".

Value

ontology_index object.

See Also

get_relation_names

oganm/ontologyIndexOgfork documentation built on Oct. 11, 2019, 2:53 a.m.