testGene: testGene

Description Usage Arguments

View source: R/functions.R

Description

This function test for significant differences in expression between two groups for a single gene within a relativeExpression dataframe.

Usage

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testGene(relativeExpDF, groupCol, geneCol, expressionCol, gene,
  alternative = "two.sided", filterOutliers = T, controlGroup,
  treatedGroup)

Arguments

relativeExpDF

Dataframe with gene relative expression information.

groupCol

Grouping column to be used for difference testing.

geneCol

Column containing gene names.

expressionCol

Column containing relative expression.

gene

Gene to test.

alternative

Alternative hypothesis for the test

filterOutliers

Whether to remove outliers or not. Only one outlier per group based on Grubb's test.

controlGroup

Name of the control group.

treatedGroup

Name of the treated group. ("two.sided", "greater" or "less").


ogianatiempo/qPCRutils documentation built on Dec. 3, 2019, 11:05 p.m.