Usage Arguments Details Author(s)
1 2 3 |
.object |
- An |
.index |
- Index of the tree you wish you plot (in the case of bootstrapped trees) |
.horizontal |
- Whether to plot the tree with horizontal orientation |
.lineWidth |
- The width of the tree lines |
.depth |
- Maximum plotting depth (useful for large trees) |
.labSize |
- The size of the node labels |
.labAng |
- The angle of node labels |
.ggReturn |
- Whether to return a |
.ylimLow |
- Lower limit of y axis |
.ylimHigh |
- Higher limit of y axis |
.node |
- A node you wish to highlight. The node is specified as a path throught the tree from the root node.
Example: |
.round |
- The number of rounding digits for labels. |
This function relies on the extractNodeData
function and ggplot
plotting package.
The function outputs publication ready images of the passed tree.
Ognjen Grujic (ogyg@stanford.edu)
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