In ohdsi-studies/CancerTxPathway:

library(flexdashboard)
library(shiny)
library(CancerTxPathway)
library(dplyr)
library(highcharter)
library(plotly)

Usage Patterns

Inputs {.sidebar}

Annual Usage patterns in treatment regimen

The proportion of the patients number treated each regimen for total chemotherapy received patients.

inputPanel(
  sliderInput("yearThreshold", "Range of the year",min = 1970, max = 2020, value = c(1990,2020))
)

Annual Usage patterns in treatment regimen

The proportion of the patients number treated each regimen for total chemotherapy received patients.

inputPanel(
  sliderInput("yearThreshold", "Range of the year",min = 1970, max = 2020, value = c(1990,2020))
)

Row

Treatment Pathway

treatmentPathway(connectionDetails,
                 cohortDatabaseSchema,
                 cohortTable,
                 outputFolder,
                 outputFileTitle,
                 conditionCohortIds,
                 targetCohortIds,
                 eventCohortIds = surgeryCohortIds,
                 minimumRegimenChange = 0,
                 treatmentLine,
                 collapseDates,
                 nodeMinSubject)

Row

Usage patterns of the treatment

fromYear <- reactive(input$yearThreshold[1])
toYear <- reactive(input$yearThreshold[2])
output$usage <- renderHighchart({
  usagePatternGraph(connectionDetails,
                    cohortDatabaseSchema,
                    cohortTable,
                    targetCohortIds,
                    conditionCohortIds,
                    outputFolder,
                    outputFileTitle,
                    fromYear(),
                    toYear())

})

highchartOutput('usage')

Treatment Iteration Distribution

heatmapPlotData<-heatmapData(connectionDetails,
                             cohortDatabaseSchema,
                             cohortTable,
                             targetCohortIds,
                             outputFolder,
                             outputFileTitle,
                             identicalSeriesCriteria,
                             conditionCohortIds)
treatmentIterationDistribution(heatmapPlotData,
                               maximumCycleNumber,
                               heatmapColor)

Event Incidence In Treatment Iteration

Inputs {.sidebar}

textInput("ui2","Keyword","regimen")
actionButton("act","Change apply")

Column {data-width=600}

Chart 1

renderPlot(cycleIncidencePlot(connectionDetails,
                   cohortDatabaseSchema,
                   cohortTable,
                   outputFolder,
                   outputFileTitle,
                   targetCohortIds,
                   conditionCohortIds,
                   eventCohortIds,
                   restrictInitialSeries = TRUE,
                   restricInitialEvent =TRUE,
                   identicalSeriesCriteria,
                   eventPeriod = 30,
                   targetMin))

Event Onset Timing

Column {data-width=600}

Chart 2

renderPlotly(incidenceDatePlot(connectionDetails,
                  cohortDatabaseSchema,
                  cohortTable,
                  targetCohortIds,
                  outputFolder,
                  outputFileTitle,
                  identicalSeriesCriteria = 60,
                  conditionCohortIds,
                  eventCohortIds,
                  restrictEventDate = 90))

About

Copyright 2020 Observational Health Data Sciences and Informatics

This file is part of CancerTxPathway

Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at

http://www.apache.org/licenses/LICENSE-2.0

Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License.

ohdsi-studies/CancerTxPathway documentation built on March 21, 2020, 12:24 a.m.