getCohortCovariateData: Extracts covariates based on cohorts

In ohdsi-studies/DistributedLMM: Predicting Length of Hopsital Stay for COVID-19

Description

Extracts covariates based on cohorts

Usage

getCohortCovariateData(
  connection,
  oracleTempSchema = NULL,
  cdmDatabaseSchema,
  cdmVersion = "5",
  cohortTable = "#cohort_person",
  rowIdField = "row_id",
  aggregated,
  cohortId,
  covariateSettings
)

Arguments

connection	The database connection
oracleTempSchema	The temp schema if using oracle
cdmDatabaseSchema	The schema of the OMOP CDM data
cdmVersion	version of the OMOP CDM data
cohortTable	the table name that contains the target population cohort
rowIdField	string representing the unique identifier in the target population cohort
aggregated	whether the covariate should be aggregated
cohortId	cohort id for the target population cohort
covariateSettings	settings for the covariate cohorts and time periods

Details

The user specifies a cohort and time period and then a covariate is constructed whether they are in the cohort during the time periods relative to target population cohort index

Value

The models will now be in the package

ohdsi-studies/DistributedLMM documentation built on June 19, 2021, 1:12 p.m.