Files in ohdsi-studies/EhdenRaDmardsEstimation
A Package Skeleton for Comparative Effectiveness Studies
.Rbuildignore
.Rprofile
.gitignore
DESCRIPTION
EhdenRaDmardsEstimation.Rproj
HydraConfig.json
NAMESPACE
R/AssessCovarBalanceAndPrevalence.R
R/CohortMethod.R
R/CreateAllCohorts.R
R/CreateCohorts.R
R/CreateManusriptTables.R
R/Diagnostics.R
R/Export.R
R/Main.R
R/MetaAnalysis.R
R/Package.R
R/PremergeShinyDataFiles.R
R/RenameShinyFileNames.R
R/ShinyApps.R
R/SubmitResults.R
R/SynthesizePositiveControls.R
README.md
badgesMarkdownCode.md
documents/20200117_RAPLE_EUPAS_final.docx
documents/README.md
documents/conceptSetExpressions.xlsx
extras/CodeToRun.R
extras/CodeToRunLocal.R
extras/CreateCodeSetWorkbook.R
extras/PackageMaintenance.R
extras/getResults/DataPulls.R
extras/getResults/PlotsAndTables.R
extras/getResults/dataClean.R
extras/getResults/global.R
inst/cohorts/EHDEN_RA_Acute_myocardial_infarction_events_in_any_visit.json
inst/cohorts/EHDEN_RA_Acute_myocardial_infarction_events_in_hospitalER_visit.json
inst/cohorts/EHDEN_RA_Leukopenia.json
inst/cohorts/EHDEN_RA_New_users_of_hydroxychloroquine_monotherapy.json
inst/cohorts/EHDEN_RA_New_users_of_leflunomide_monotherapy.json
inst/cohorts/EHDEN_RA_New_users_of_methoxtrexate_monotherapy.json
inst/cohorts/EHDEN_RA_New_users_of_sulfasalazine_monotherapy.json
inst/cohorts/EHDEN_RA_Opportunistic_Infections.json
inst/cohorts/EHDEN_RA_Pancytopenia.json
inst/cohorts/EHDEN_RA_Persons_with_a_Malignant_neoplasm_of_breast_1_dx.json
inst/cohorts/EHDEN_RA_Persons_with_a_Malignant_neoplasm_of_colon_and_rectum_1_dx.json
inst/cohorts/EHDEN_RA_Persons_with_a_Malignant_neoplasm_of_leukemia_1_dx.json
inst/cohorts/EHDEN_RA_Persons_with_a_Malignant_neoplasm_of_lung_1_dx.json
inst/cohorts/EHDEN_RA_Persons_with_a_Malignant_neoplasm_of_lymphoma_1_dx.json
inst/cohorts/EHDEN_RA_Persons_with_a_malignant_neoplasm_other_than_nonmelanoma_skin_cancer_1_dx.json
inst/cohorts/EHDEN_RA_Serious_Infection__events.json
inst/cohorts/EHDEN_RA_Serious_Infection_opportunistic_infections_and_other_infections_of_interest_event.json
inst/cohorts/EHDEN_RA_Stroke_ischemic_or_hemorrhagic_events_any_visit.json
inst/cohorts/EHDEN_RA_Stroke_ischemic_or_hemorrhagic_events_in_hospitalER_visit.json
inst/settings/CohortsToCreate.csv
inst/settings/NegativeControls.csv
inst/settings/StudySpecification.json
inst/settings/TcosOfInterest.csv
inst/settings/cmAnalysisList.json
inst/shiny/EvidenceExplorer/DataPulls.R
inst/shiny/EvidenceExplorer/EvidenceExplorer.Rproj
inst/shiny/EvidenceExplorer/PlotsAndTables.R
inst/shiny/EvidenceExplorer/Table1Specs.csv
inst/shiny/EvidenceExplorer/global.R
inst/shiny/EvidenceExplorer/server.R
inst/shiny/EvidenceExplorer/ui.R
inst/sql/sql_server/CreateCohortTable.sql
inst/sql/sql_server/EHDEN_RA_Acute_myocardial_infarction_events_in_any_visit.sql
inst/sql/sql_server/EHDEN_RA_Acute_myocardial_infarction_events_in_hospitalER_visit.sql
inst/sql/sql_server/EHDEN_RA_Leukopenia.sql
inst/sql/sql_server/EHDEN_RA_New_users_of_hydroxychloroquine_monotherapy.sql
inst/sql/sql_server/EHDEN_RA_New_users_of_leflunomide_monotherapy.sql
inst/sql/sql_server/EHDEN_RA_New_users_of_methoxtrexate_monotherapy.sql
inst/sql/sql_server/EHDEN_RA_New_users_of_sulfasalazine_monotherapy.sql
inst/sql/sql_server/EHDEN_RA_Opportunistic_Infections.sql
inst/sql/sql_server/EHDEN_RA_Pancytopenia.sql
inst/sql/sql_server/EHDEN_RA_Persons_with_a_Malignant_neoplasm_of_breast_1_dx.sql
inst/sql/sql_server/EHDEN_RA_Persons_with_a_Malignant_neoplasm_of_colon_and_rectum_1_dx.sql
inst/sql/sql_server/EHDEN_RA_Persons_with_a_Malignant_neoplasm_of_leukemia_1_dx.sql
inst/sql/sql_server/EHDEN_RA_Persons_with_a_Malignant_neoplasm_of_lung_1_dx.sql
inst/sql/sql_server/EHDEN_RA_Persons_with_a_Malignant_neoplasm_of_lymphoma_1_dx.sql
inst/sql/sql_server/EHDEN_RA_Persons_with_a_malignant_neoplasm_other_than_nonmelanoma_skin_cancer_1_dx.sql
inst/sql/sql_server/EHDEN_RA_Serious_Infection__events.sql
inst/sql/sql_server/EHDEN_RA_Serious_Infection_opportunistic_infections_and_other_infections_of_interest_event.sql
inst/sql/sql_server/EHDEN_RA_Stroke_ischemic_or_hemorrhagic_events_any_visit.sql
inst/sql/sql_server/EHDEN_RA_Stroke_ischemic_or_hemorrhagic_events_in_hospitalER_visit.sql
inst/sql/sql_server/GetCounts.sql
inst/sql/sql_server/NegativeControlOutcomes.sql
man/EhdenRaDmardsEstimation.Rd
man/createCohorts.Rd
man/execute.Rd
man/exportResults.Rd
man/generateDiagnostics.Rd
man/launchEvidenceExplorer.Rd
man/prepareForEvidenceExplorer.Rd
man/runCohortMethod.Rd
man/submitResults.Rd
man/synthesizePositiveControls.Rd
