.Rbuildignore
.Rprofile
.gitignore
DESCRIPTION
HERACharacterization.Rproj
HERA_protocol_v6.pdf
LICENSE
NAMESPACE
R/CohortCharacterization.R
R/CohortConstruction.R
R/FeatureConstruction.R
R/HERA.R
R/Incremental.R
R/Logging.R
R/ResourceFiles.R
R/RunStudy.R
R/Sharing.R
R/Shiny.R
R/SubgroupConstruction.R
README.md
STUDY-EXECUTION.md
STUDY-PACKAGE-SETUP.md
extras/CodeToRun.R
extras/LoadNetworkDatabaseResults.R
extras/PackageMaintenance.R
inst/cohorts/1000.json
inst/cohorts/1001.json
inst/cohorts/1002.json
inst/cohorts/1003.json
inst/cohorts/1004.json
inst/cohorts/1005.json
inst/cohorts/1006.json
inst/cohorts/1007.json
inst/cohorts/132702003.json
inst/cohorts/132797003.json
inst/cohorts/133444001.json
inst/cohorts/133834005.json
inst/cohorts/134442005.json
inst/cohorts/137977001.json
inst/cohorts/138379003.json
inst/cohorts/138994001.json
inst/cohorts/139803005.json
inst/cohorts/140168003.json
inst/cohorts/140352001.json
inst/cohorts/140673001.json
inst/cohorts/141456001.json
inst/cohorts/192671003.json
inst/cohorts/192675003.json
inst/cohorts/193782005.json
inst/cohorts/194133001.json
inst/cohorts/194992001.json
inst/cohorts/197320004.json
inst/cohorts/197494004.json
inst/cohorts/197508001.json
inst/cohorts/198571003.json
inst/cohorts/198985001.json
inst/cohorts/199074003.json
inst/cohorts/2000.json
inst/cohorts/2001.json
inst/cohorts/2002.json
inst/cohorts/200219001.json
inst/cohorts/2003.json
inst/cohorts/2004.json
inst/cohorts/2005.json
inst/cohorts/2006.json
inst/cohorts/2007.json
inst/cohorts/201.json
inst/cohorts/201214001.json
inst/cohorts/201254003.json
inst/cohorts/201340001.json
inst/cohorts/201606003.json
inst/cohorts/201620001.json
inst/cohorts/201826005.json
inst/cohorts/202.json
inst/cohorts/24134003.json
inst/cohorts/24609003.json
inst/cohorts/254443003.json
inst/cohorts/255573003.json
inst/cohorts/255848004.json
inst/cohorts/257007001.json
inst/cohorts/257628003.json
inst/cohorts/312327003.json
inst/cohorts/312437003.json
inst/cohorts/312939001.json
inst/cohorts/31317003.json
inst/cohorts/313217006.json
inst/cohorts/313223001.json
inst/cohorts/313459001.json
inst/cohorts/313800003.json
inst/cohorts/314381003.json
inst/cohorts/314383003.json
inst/cohorts/316139001.json
inst/cohorts/316866003.json
inst/cohorts/317009003.json
inst/cohorts/318736003.json
inst/cohorts/318800003.json
inst/cohorts/319049003.json
inst/cohorts/31967003.json
inst/cohorts/321052001.json
inst/cohorts/372328001.json
inst/cohorts/373503003.json
inst/cohorts/374021003.json
inst/cohorts/374919003.json
inst/cohorts/374954001.json
inst/cohorts/376713003.json
inst/cohorts/378419003.json
inst/cohorts/380378008.json
inst/cohorts/381270001.json
inst/cohorts/381316003.json
inst/cohorts/4038838001.json
inst/cohorts/40479589003.json
inst/cohorts/4074815003.json
inst/cohorts/4091559001.json
inst/cohorts/4103295003.json
inst/cohorts/4133004005.json
inst/cohorts/4164770003.json
inst/cohorts/4180790001.json
inst/cohorts/4181343001.json
inst/cohorts/4182210001.json
inst/cohorts/4201096003.json
inst/cohorts/4245975003.json
inst/cohorts/4246127001.json
inst/cohorts/42535714003.json
inst/cohorts/4256228001.json
inst/cohorts/4266367003.json
inst/cohorts/4281232001.json
inst/cohorts/4290976003.json
inst/cohorts/4311499001.json
inst/cohorts/4322024001.json
inst/cohorts/432791003.json
inst/cohorts/432867001.json
inst/cohorts/432870003.json
inst/cohorts/432870004.json
inst/cohorts/433736003.json
inst/cohorts/434119003.json
inst/cohorts/434557003.json
inst/cohorts/434592003.json
inst/cohorts/43530714003.json
inst/cohorts/435783003.json
inst/cohorts/436073003.json
inst/cohorts/436100003.json
inst/cohorts/436642004.json
inst/cohorts/436665001.json
inst/cohorts/436676001.json
inst/cohorts/436962003.json
inst/cohorts/437082001.json
inst/cohorts/437233001.json
inst/cohorts/437541001.json
inst/cohorts/438409001.json
inst/cohorts/439727004.json
inst/cohorts/439776001.json
inst/cohorts/440383003.json
inst/cohorts/440417003.json
inst/cohorts/440674001.json
inst/cohorts/440740001.json
inst/cohorts/441202003.json
inst/cohorts/443387001.json
inst/cohorts/443454003.json
inst/cohorts/444044001.json
inst/cohorts/44784217001.json
inst/cohorts/45763653003.json
inst/cohorts/46271022006.json
inst/cohorts/75860003.json
inst/cohorts/80180003.json
inst/cohorts/80502001.json
inst/cohorts/80809003.json
inst/cohorts/81893003.json
inst/cohorts/81931004.json
inst/settings/BulkSubgroup.csv
inst/settings/CohortGroups.csv
inst/settings/CohortsToCreateFeature.csv
inst/settings/CohortsToCreateSubgroup.csv
inst/settings/CohortsToCreateTarget.csv
inst/settings/CohortsToDeriveTarget.csv
inst/settings/diagnostics/CohortsToCreate.csv
inst/settings/featureTimeWindows.csv
inst/settings/heraCohortDescriptionInput.csv
inst/settings/rEnvironmentSnapshot.csv
inst/settings/targetSubgroupXref.csv
inst/shiny/ResultsExplorer/DataPulls.R
inst/shiny/ResultsExplorer/PlotsAndTables.R
inst/shiny/ResultsExplorer/ResultsExplorer.Rproj
inst/shiny/ResultsExplorer/ResultsExplorer.zip
inst/shiny/ResultsExplorer/Table1Specs.csv
inst/shiny/ResultsExplorer/cohortXref.csv
inst/shiny/ResultsExplorer/cohorts.csv
inst/shiny/ResultsExplorer/databaseTermsOfUse.csv
inst/shiny/ResultsExplorer/global.R
inst/shiny/ResultsExplorer/html/cohortCharacterization.html
inst/shiny/ResultsExplorer/html/cohortCounts.html
inst/shiny/ResultsExplorer/html/compareCohortCharacterization.html
inst/shiny/ResultsExplorer/html/download.html
inst/shiny/ResultsExplorer/md/about.md
inst/shiny/ResultsExplorer/md/cohorts.md
inst/shiny/ResultsExplorer/md/terms_of_use.md
inst/shiny/ResultsExplorer/server.R
inst/shiny/ResultsExplorer/ui.R
inst/shiny/ResultsExplorer/www/favicon.ico
inst/shiny/ResultsExplorer/www/js/hera.js
inst/shiny/ResultsExplorer/www/js/lib/js.cookie.js
inst/shiny/ResultsExplorer/www/logo.png
inst/shiny/ResultsExplorer/www/ohdsi.css
inst/sql/postgresql/networkResultsConstraintsAndIndicies.sql
inst/sql/postgresql/networkResultsSchema.sql
inst/sql/postgresql/removeDuplicateCovariates.sql
inst/sql/sql_server/1000.sql
inst/sql/sql_server/1001.sql
inst/sql/sql_server/1002.sql
inst/sql/sql_server/1003.sql
inst/sql/sql_server/1004.sql
inst/sql/sql_server/1005.sql
inst/sql/sql_server/1006.sql
inst/sql/sql_server/1007.sql
inst/sql/sql_server/132702003.sql
inst/sql/sql_server/132797003.sql
inst/sql/sql_server/133444001.sql
inst/sql/sql_server/133834005.sql
inst/sql/sql_server/134442005.sql
inst/sql/sql_server/137977001.sql
inst/sql/sql_server/138379003.sql
inst/sql/sql_server/138994001.sql
inst/sql/sql_server/139803005.sql
inst/sql/sql_server/140168003.sql
inst/sql/sql_server/140352001.sql
inst/sql/sql_server/140673001.sql
inst/sql/sql_server/141456001.sql
inst/sql/sql_server/192671003.sql
inst/sql/sql_server/192675003.sql
inst/sql/sql_server/193782005.sql
inst/sql/sql_server/194133001.sql
inst/sql/sql_server/194992001.sql
inst/sql/sql_server/197320004.sql
inst/sql/sql_server/197494004.sql
inst/sql/sql_server/197508001.sql
inst/sql/sql_server/198571003.sql
inst/sql/sql_server/198985001.sql
inst/sql/sql_server/199074003.sql
inst/sql/sql_server/2000.sql
inst/sql/sql_server/2001.sql
inst/sql/sql_server/2002.sql
inst/sql/sql_server/200219001.sql
inst/sql/sql_server/2003.sql
inst/sql/sql_server/2004.sql
inst/sql/sql_server/2005.sql
inst/sql/sql_server/2006.sql
inst/sql/sql_server/2007.sql
inst/sql/sql_server/201214001.sql
inst/sql/sql_server/201254003.sql
inst/sql/sql_server/201340001.sql
inst/sql/sql_server/201606003.sql
inst/sql/sql_server/201620001.sql
inst/sql/sql_server/201826005.sql
inst/sql/sql_server/24134003.sql
inst/sql/sql_server/24609003.sql
inst/sql/sql_server/254443003.sql
inst/sql/sql_server/255573003.sql
inst/sql/sql_server/255848004.sql
inst/sql/sql_server/257007001.sql
inst/sql/sql_server/257628003.sql
inst/sql/sql_server/312327003.sql
inst/sql/sql_server/312437003.sql
inst/sql/sql_server/312939001.sql
inst/sql/sql_server/31317003.sql
inst/sql/sql_server/313217006.sql
inst/sql/sql_server/313223001.sql
inst/sql/sql_server/313459001.sql
inst/sql/sql_server/313800003.sql
inst/sql/sql_server/314381003.sql
inst/sql/sql_server/314383003.sql
inst/sql/sql_server/316139001.sql
inst/sql/sql_server/316866003.sql
inst/sql/sql_server/317009003.sql
inst/sql/sql_server/318736003.sql
inst/sql/sql_server/318800003.sql
inst/sql/sql_server/319049003.sql
inst/sql/sql_server/31967003.sql
inst/sql/sql_server/321052001.sql
inst/sql/sql_server/372328001.sql
inst/sql/sql_server/373503003.sql
inst/sql/sql_server/374021003.sql
inst/sql/sql_server/374919003.sql
inst/sql/sql_server/374954001.sql
inst/sql/sql_server/376713003.sql
inst/sql/sql_server/378419003.sql
inst/sql/sql_server/380378008.sql
inst/sql/sql_server/381270001.sql
inst/sql/sql_server/381316003.sql
inst/sql/sql_server/4038838001.sql
inst/sql/sql_server/40479589003.sql
inst/sql/sql_server/4074815003.sql
inst/sql/sql_server/4091559001.sql
inst/sql/sql_server/4103295003.sql
inst/sql/sql_server/4133004005.sql
inst/sql/sql_server/4164770003.sql
inst/sql/sql_server/4180790001.sql
inst/sql/sql_server/4181343001.sql
inst/sql/sql_server/4182210001.sql
inst/sql/sql_server/4201096003.sql
inst/sql/sql_server/4245975003.sql
inst/sql/sql_server/4246127001.sql
inst/sql/sql_server/42535714003.sql
inst/sql/sql_server/4256228001.sql
inst/sql/sql_server/4266367003.sql
inst/sql/sql_server/4281232001.sql
inst/sql/sql_server/4290976003.sql
inst/sql/sql_server/4311499001.sql
inst/sql/sql_server/4322024001.sql
inst/sql/sql_server/432791003.sql
inst/sql/sql_server/432867001.sql
inst/sql/sql_server/432870003.sql
inst/sql/sql_server/432870004.sql
inst/sql/sql_server/433736003.sql
inst/sql/sql_server/434119003.sql
inst/sql/sql_server/434557003.sql
inst/sql/sql_server/434592003.sql
inst/sql/sql_server/43530714003.sql
inst/sql/sql_server/435783003.sql
inst/sql/sql_server/436073003.sql
inst/sql/sql_server/436100003.sql
inst/sql/sql_server/436642004.sql
inst/sql/sql_server/436665001.sql
inst/sql/sql_server/436676001.sql
inst/sql/sql_server/436962003.sql
inst/sql/sql_server/437082001.sql
inst/sql/sql_server/437233001.sql
inst/sql/sql_server/437541001.sql
inst/sql/sql_server/438409001.sql
inst/sql/sql_server/439727004.sql
inst/sql/sql_server/439776001.sql
inst/sql/sql_server/440383003.sql
inst/sql/sql_server/440417003.sql
inst/sql/sql_server/440674001.sql
inst/sql/sql_server/440740001.sql
inst/sql/sql_server/441202003.sql
inst/sql/sql_server/443387001.sql
inst/sql/sql_server/443454003.sql
inst/sql/sql_server/444044001.sql
inst/sql/sql_server/44784217001.sql
inst/sql/sql_server/45763653003.sql
inst/sql/sql_server/46271022006.sql
inst/sql/sql_server/75860003.sql
inst/sql/sql_server/80180003.sql
inst/sql/sql_server/80502001.sql
inst/sql/sql_server/80809003.sql
inst/sql/sql_server/81893003.sql
inst/sql/sql_server/81931004.sql
inst/sql/sql_server/BulkFeatureExtraction.sql
inst/sql/sql_server/CohortCounts.sql
inst/sql/sql_server/CopyAndCensorCohorts.sql
inst/sql/sql_server/CreateCohortTable.sql
inst/sql/sql_server/CreateDerivedCohorts.sql
inst/sql/sql_server/CreateFeatureProportions.sql
inst/sql/sql_server/CreateInclusionStatsTables.sql
inst/sql/sql_server/GetFeatureProportions.sql
inst/sql/sql_server/subgroup/SubgroupByAge.sql
inst/sql/sql_server/subgroup/SubgroupByCohort.sql
inst/sql/sql_server/subgroup/SubgroupByFollowUpTime.sql
inst/sql/sql_server/subgroup/SubgroupByGender.sql
inst/sql/sql_server/subgroup/SubgroupByIndex.sql
inst/sql/sql_server/subgroup/SubgroupByRace.sql
man-roxygen/CdmDatabaseSchema.R
man-roxygen/CohortDef.R
man-roxygen/CohortSetReference.R
man-roxygen/CohortSetSpecs.R
man-roxygen/CohortStagingTable.R
man-roxygen/CohortTable.R
man-roxygen/ConceptCounts.R
man-roxygen/Connection.R
man-roxygen/OracleTempSchema.R
man/HERACharacterization-package.Rd
man/copyAndCensorCohorts.Rd
man/createBulkCharacteristics.Rd
man/createBulkSubgroup.Rd
man/createBulkSubgroupFromCohorts.Rd
man/createBulkSubgroupFromFile.Rd
man/createCohortTable.Rd
man/getBulkSubgroup.Rd
man/getCohortBasedSubgroup.Rd
man/getCohortCharacteristics.Rd
man/getCohortGroups.Rd
man/getCohortsToCreate.Rd
man/getCohortsToDeriveTarget.Rd
man/getFeatures.Rd
man/getInclusionStatistics.Rd
man/getInclusionStatisticsFromFiles.Rd
man/getTargetSubgroupXref.Rd
man/instantiateCohortSet.Rd
man/preMergeResultsFiles.Rd
man/uploadResults.Rd
man/writeBulkCharacteristics.Rd
renv.lock
renv/.gitignore
renv/activate.R
renv/settings.dcf
renv_r3.6.lock