createBulkSubgroupFromFile: Create bulk subgroups from settings file
In ohdsi-studies/HERACharacterization: Health Equity Research Assessment

createBulkSubgroupFromFile

R Documentation

Create bulk subgroups from settings file

This function creates subgroups of the target cohorts based on the settings file located in inst/settings/BulkSubgroup.csv

This function assumes that cohorts are already generated and located in the cohortDatabaseSchema.cohortStagingTable

createBulkSubgroupFromFile(
  connection,
  cdmDatabaseSchema,
  cohortDatabaseSchema,
  cohortStagingTable,
  targetIds,
  oracleTempSchema
)

`connection`	An object of type `connection` as created using the `connect` function in the DatabaseConnector package. Can be left NULL if `connectionDetails` is provided, in which case a new connection will be opened at the start of the function, and closed when the function finishes.
`cdmDatabaseSchema`	Schema name where your patient-level data in OMOP CDM format resides. Note that for SQL Server, this should include both the database and schema name, for example 'cdm_data.dbo'.
`cohortDatabaseSchema`	Schema name where your cohort table resides. Note that for SQL Server, this should include both the database and schema name, for example 'scratch.dbo'.
`cohortStagingTable`	Name of the staging cohort table containing the cohorts before performing any sub-grouping
`targetIds`	A vector containing the target cohort IDs to subgroup
`oracleTempSchema`	Should be used in Oracle to specify a schema where the user has write privileges for storing temporary tables.
`connectionDetails`	An object of type `connectionDetails` as created using the `createConnectionDetails` function in the DatabaseConnector package. Can be left NULL if `connection` is provided.