LegendT2dmCohortExplorer: LEGEND-T2DM Cohort Explorer

View source: R/Shiny.R

launchCohortExplorer

R Documentation

Launch the Cohort/Diagnostics Explorer Shiny app

Description

Launch the Cohort/Diagnostics Explorer Shiny app

Usage

launchCohortExplorer(
  cohorts = "class",
  dataFolder = "data",
  dataFile = "PreMerged.RData",
  connectionDetails = NULL,
  aboutText = NULL,
  runOverNetwork = FALSE,
  port = 80,
  launch.browser = FALSE
)

Arguments

`dataFolder`	A folder where the premerged file is stored. Use the `preMergeDiagnosticsFiles` function to generate this file.
`dataFile`	(Optional) The name of the .RData file with results. It is commonly known as the Premerged file.
`connectionDetails`	An object of type `connectionDetails` as created using the `createConnectionDetails` function in the DatabaseConnector package, specifying how to connect to the server where the study results results have been uploaded using the `uploadResults` function.
`aboutText`	Text (using HTML markup) that will be displayed in an About tab in the Shiny app. If not provided, no About tab will be shown.
`runOverNetwork`	(optional) Do you want the app to run over your network?
`port`	(optional) Only used if `runOverNetwork` = TRUE.
`launch.browser`	Should the app be launched in your default browser, or in a Shiny window. Note: copying to clipboard will not work in a Shiny window.
`cohort`	The set of cohorts to display; currently options are `class` and `outcome`
`resultsDatabaseSchema`	The schema on the database server where the results have been uploaded.
`vocabularyDatabaseSchemas`	(optional) A list of one or more schemas on the database server where the vocabulary tables are located. The default value is the value of the resultsDatabaseSchema. We can provide a list of vocabulary schema that might represent different versions of the OMOP vocabulary tables. It allows us to compare the impact of vocabulary changes on Diagnostics.
`appDir`	Top directory of Shiny app