getMeasurementCohortCovariateData: Extracts covariates based on measurements and cohort

In ohdsi-studies/PCE: A Package Skeleton for Replicating Published Prediction Models

Description

Extracts covariates based on measurements and cohort

Usage

getMeasurementCohortCovariateData(
  connection,
  oracleTempSchema = NULL,
  cdmDatabaseSchema,
  cdmVersion = "5",
  cohortTable = "#cohort_person",
  rowIdField = "row_id",
  aggregated,
  cohortId,
  covariateSettings
)

Arguments

connection	The database connection
oracleTempSchema	The temp schema if using oracle
cdmDatabaseSchema	The schema of the OMOP CDM data
cdmVersion	version of the OMOP CDM data
cohortTable	the table name that contains the target population cohort
rowIdField	string representing the unique identifier in the target population cohort
aggregated	whether the covariate should be aggregated
cohortId	cohort id for the target population cohort
covariateSettings	settings for the covariate cohorts and time periods

Details

This extracts measurement values for a concept set of measurement concept ids within some cohort

Value

The models will now be in the package

ohdsi-studies/PCE documentation built on Feb. 15, 2021, 6:33 a.m.