Files in ohdsi-studies/ScyllaCharacterization
Characterize all emerging drug therapies used in COVID-19 treatment
.Rbuildignore
.Rprofile
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/CohortCharacterization.R
R/CohortConstruction.R
R/CohortDiagnostics.R
R/FeatureConstruction.R
R/Incremental.R
R/Logging.R
R/ResourceFiles.R
R/RunStudy.R
R/ScyllaCharacterization.R
R/Sharing.R
R/Shiny.R
R/SubgroupConstruction.R
README.md
STUDY-EXECUTION.md
STUDY-PACKAGE-SETUP.md
ScyllaCharacterization.Rproj
documents/OHDSI-SCYLLA-PLE-COVID-effectiveness-protocol.pdf
extras/CodeToRun.R
extras/PackageMaintenance.R
extras/PreMergeDiagnostics.R
extras/ProjectSetup.R
inst/cohorts/1001.json
inst/cohorts/1002.json
inst/cohorts/1003.json
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inst/settings/CohortsToCreateTarget.csv
inst/settings/diagnostics/CohortsToCreateFeature.csv
inst/settings/diagnostics/CohortsToCreateSubgroup.csv
inst/settings/diagnostics/CohortsToCreateTarget.csv
inst/settings/featureTimeWindows.csv
inst/settings/rEnvironmentSnapshot.csv
inst/settings/targetSubgroupXref.csv
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inst/shiny/DiagnosticsExplorer/Table1Specs.csv
inst/shiny/DiagnosticsExplorer/global.R
inst/shiny/DiagnosticsExplorer/html/cohortCharacterization.html
inst/shiny/DiagnosticsExplorer/html/cohortCounts.html
inst/shiny/DiagnosticsExplorer/html/cohortOverlap.html
inst/shiny/DiagnosticsExplorer/html/compareCohortCharacterization.html
inst/shiny/DiagnosticsExplorer/html/incidenceRate.html
inst/shiny/DiagnosticsExplorer/html/includedConcepts.html
inst/shiny/DiagnosticsExplorer/html/inclusionRuleStats.html
inst/shiny/DiagnosticsExplorer/html/indexEventBreakdown.html
inst/shiny/DiagnosticsExplorer/html/orphanConcepts.html
inst/shiny/DiagnosticsExplorer/html/temporalCharacterization.html
inst/shiny/DiagnosticsExplorer/html/timeDistribution.html
inst/shiny/DiagnosticsExplorer/md/terms_of_use.md
inst/shiny/DiagnosticsExplorer/server.R
inst/shiny/DiagnosticsExplorer/ui.R
inst/shiny/DiagnosticsExplorer/www/js/app.js
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inst/shiny/ResultsExplorer/DataPulls.R
inst/shiny/ResultsExplorer/PlotsAndTables.R
inst/shiny/ResultsExplorer/ResultsExplorer.Rproj
inst/shiny/ResultsExplorer/ResultsExplorer.zip
inst/shiny/ResultsExplorer/Table1Specs.csv
inst/shiny/ResultsExplorer/cohortXref.csv
inst/shiny/ResultsExplorer/cohorts.csv
inst/shiny/ResultsExplorer/databaseTermsOfUse.csv
inst/shiny/ResultsExplorer/global.R
inst/shiny/ResultsExplorer/html/cohortCharacterization.html
inst/shiny/ResultsExplorer/html/cohortCounts.html
inst/shiny/ResultsExplorer/html/compareCohortCharacterization.html
inst/shiny/ResultsExplorer/html/download.html
inst/shiny/ResultsExplorer/md/about.md
inst/shiny/ResultsExplorer/md/cohorts.md
inst/shiny/ResultsExplorer/md/terms_of_use.md
inst/shiny/ResultsExplorer/server.R
inst/shiny/ResultsExplorer/ui.R
inst/shiny/ResultsExplorer/www/favicon.ico
inst/shiny/ResultsExplorer/www/js/lib/js.cookie.js
inst/shiny/ResultsExplorer/www/js/scyllaCharacterization.js
inst/shiny/ResultsExplorer/www/logo.png
inst/shiny/ResultsExplorer/www/ohdsi.css
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inst/sql/sql_server/BulkFeatureExtraction.sql
inst/sql/sql_server/CohortCounts.sql
inst/sql/sql_server/CopyAndCensorCohorts.sql
inst/sql/sql_server/CreateCohortTable.sql
inst/sql/sql_server/CreateFeatureProportions.sql
inst/sql/sql_server/CreateInclusionStatsTables.sql
inst/sql/sql_server/GetFeatureProportions.sql
inst/sql/sql_server/subgroup/SubgroupByAge.sql
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inst/sql/sql_server/subgroup/SubgroupByGender.sql
inst/sql/sql_server/subgroup/SubgroupByIndex.sql
inst/sql/sql_server/subgroup/SubgroupByRace.sql
man-roxygen/CdmDatabaseSchema.R
man-roxygen/CohortDef.R
man-roxygen/CohortSetReference.R
man-roxygen/CohortSetSpecs.R
man-roxygen/CohortStagingTable.R
man-roxygen/CohortTable.R
man-roxygen/ConceptCounts.R
man-roxygen/Connection.R
man-roxygen/OracleTempSchema.R
man/ScyllaCharacterization-package.Rd
man/copyAndCensorCohorts.Rd
man/createBulkCharacteristics.Rd
man/createBulkSubgroup.Rd
man/createBulkSubgroupFromCohorts.Rd
man/createBulkSubgroupFromFile.Rd
man/createCohortTable.Rd
man/getBulkSubgroup.Rd
man/getCohortBasedSubgroup.Rd
man/getCohortCharacteristics.Rd
man/getCohortGroups.Rd
man/getCohortsToCreate.Rd
man/getFeatures.Rd
man/getInclusionStatistics.Rd
man/getInclusionStatisticsFromFiles.Rd
man/getTargetSubgroupXref.Rd
man/instantiateCohortSet.Rd
man/preMergeResultsFiles.Rd
man/uploadResults.Rd
man/writeBulkCharacteristics.Rd
renv.lock
renv/.gitignore
renv/activate.R
renv/settings.dcf
