extras/ProjectSetup.R

In ohdsi-studies/ScyllaCharacterization: Characterize all emerging drug therapies used in COVID-19 treatment

#------------------------------------------------------------------
# INITIAL PROJECT SETUP ---------------------------------------
#------------------------------------------------------------------
# This initial setup will ensure that you have all required
# R packages installed for use with the ScyllaCharacterization
# package. If you are running this in an environment where 
# there is no access to the Internet please see the sections
# below marked "offline setup step".
#------------------------------------------------------------------
#------------------------------------------------------------------
install.packages("renv")

projectRootFolder <- "E:/ScyllaCharacterization"
setwd(projectRootFolder)

# Download the lock file:
download.file("https://raw.githubusercontent.com/ohdsi-studies/ScyllaCharacterization/master/renv.lock", "renv.lock")
#Sys.setenv("BINPREF"="E:/R/Rtools/mingw_$(WIN)/bin/")

#------------------------------------------------------------------
# OPTIONAL: If you want to change where renv stores the 
# R packages you can specify the RENV_PATHS_ROOT. Please
# refer to https://rstudio.github.io/renv/articles/renv.html#cache
# for more details
#------------------------------------------------------------------
#Sys.setenv("RENV_PATHS_ROOT"=projectRootFolder)

#------------------------------------------------------------------
# OFFLINE SETUP STEP: If you want to have the entire contents of
# the renv R packages local to your project so that you may copy
# it to another computer, please uncomment the line below and
# specify the RENV_PATHS_CACHE location which should be your project
# folder.
#------------------------------------------------------------------
#Sys.setenv("RENV_PATHS_CACHE"=projectRootFolder)

# Build the local library:
renv::init()

# When not in RStudio, you'll need to restart R now
library(ScyllaCharacterization)

# -------------------------------------------------------------
# END Initial Project Setup
# -------------------------------------------------------------