Description Usage Arguments Details Examples
View source: R/additionalTable1.R
Generate result for revision
1 2 3 4 5 6 7 8 9 10 | additionalResult(
connectionDetails = connectionDetails,
cdmDatabaseSchema = cdmDatabaseSchema,
cohortDatabaseSchema = cohortDatabaseSchema,
cohortTable = cohortTable,
oracleTempSchema = oracleTempSchema,
outputFolder = outputFolder,
databaseId = databaseId,
minCellCount = 5
)
|
connectionDetails |
An object of type |
cdmDatabaseSchema |
Schema name where your patient-level data in OMOP CDM format resides. Note that for SQL Server, this should include both the database and schema name, for example 'cdm_data.dbo'. |
cohortDatabaseSchema |
Schema name where intermediate data can be stored. You will need to have write priviliges in this schema. Note that for SQL Server, this should include both the database and schema name, for example 'cdm_data.dbo'. |
cohortTable |
The name of the table that will be created in the work database schema. This table will hold the exposure and outcome cohorts used in this study. |
oracleTempSchema |
Should be used in Oracle to specify a schema where the user has write priviliges for storing temporary tables. |
outputFolder |
Name of local folder to place results; make sure to use forward slashes (/). Do not use a folder on a network drive since this greatly impacts performance. |
databaseId |
A short string for identifying the database (e.g. 'Synpuf'). |
minCellCount |
The minimum number of subjects contributing to a count before it can be included in packaged results. |
Generate result for revision
The createCohorts
, synthesizePositiveControls
, runAnalyses
, and runDiagnostics
arguments
are intended to be used to run parts of the full study at a time, but none of the parts are considerd to be optional.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 | ## Not run:
connectionDetails <- createConnectionDetails(dbms = "postgresql",
user = "joe",
password = "secret",
server = "myserver")
execute(connectionDetails,
cdmDatabaseSchema = "cdm_data",
cohortDatabaseSchema = "study_results",
cohortTable = "cohort",
oracleTempSchema = NULL,
outputFolder = "c:/temp/study_results",
maxCores = 4)
## End(Not run)
|
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