Files in ojcharles/hivdrg
HIV Drug Resistance Genotyping
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/add_resistance_info.R
R/annotate_variants.R
R/call_resistance.R
R/handle_fasta.R
R/read_input.R
R/read_varscan_data.R
README.Rmd
README.md
inst/app.R
inst/db/resmuts.csv
inst/db/resmuts2.csv
inst/ref/AF411967_steve.fasta
inst/ref/AF411967_steve.fasta.fai
inst/ref/AF411967_steve.gff3
inst/ref/AG_L39106.1.fasta
inst/ref/AG_L39106.1.fasta.fai
inst/ref/AG_L39106.1.gff3
inst/ref/C_AF067155.1.fasta
inst/ref/C_AF067155.1.fasta.fai
inst/ref/C_AF067155.1.gff3
inst/ref/G_U88826.1.fasta
inst/ref/G_U88826.1.fasta.fai
inst/ref/G_U88826.1.gff3
inst/ref/JX239390.1.fasta
inst/ref/JX239390.1.fasta.fai
inst/ref/JX239390.1.gff3
inst/ref/K03455.1.fasta
inst/ref/K03455.1.fasta.fai
inst/ref/K03455.1.gff3
inst/ref/K03455.1.sqlite
inst/testdata/example.fa
inst/testdata/example.vcf
man/add_resistance_info.Rd
man/annotate_variants.Rd
man/call_resistance.Rd
man/handle_fasta.Rd
man/read_input.Rd
man/read_varscan_data.Rd
tests/testthat.R
tests/testthat/test_data.R
vignettes/hivdrg-intro.Rmd
