add_resistance_info: Resistance Genotyping
In ojcharles/hivdrg: HIV Drug Resistance Genotyping
Description
Usage
Arguments
Value
View source: R/add_resistance_info.R
Description
Calls resistance for variants provided, joins the variant and resistance tables by mutational change columns. <GENE_A123B>
Usage
1
add_resistance_info(f.dat, resistance_table, all_muts = TRUE)
Arguments
f.dat
intermediate-annotated data.frame
resistance_table
the current version of the resistance db in csv format
all_muts
when TRUE all variants passed are returned even if they conferred no resistance
anecdotal
include anectodat database entries in returned results?
Value
data.frame of resistance variants
ojcharles/hivdrg documentation built on Feb. 12, 2022, 12:10 p.m.
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Description Usage Arguments Value
View source: R/add_resistance_info.R
Description
Calls resistance for variants provided, joins the variant and resistance tables by mutational change columns. <GENE_A123B>
Usage
1 | add_resistance_info(f.dat, resistance_table, all_muts = TRUE)
|
Arguments
f.dat |
intermediate-annotated data.frame |
resistance_table |
the current version of the resistance db in csv format |
all_muts |
when TRUE all variants passed are returned even if they conferred no resistance |
anecdotal |
include anectodat database entries in returned results? |
Value
data.frame of resistance variants
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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