add_resistance_info: Resistance Genotyping
In ojcharles/hsvdrg: Herpes Simplex Virus 1 and 2 Drug Resistance Genotyping
Description
Usage
Arguments
Value
View source: R/add_resistance_info.R
Description
Calls resistance for variants provided, joins the variant and resistance tables by mutational change columns. <GENE_A123B>
Usage
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add_resistance_info(
f.dat,
resistance_table,
all_muts = FALSE,
anecdotal = FALSE
)
Arguments
f.dat
intermediate-annotated data.frame
resistance_table
the current version of the resistance db in csv format
all_muts
when TRUE all variants passed are returned even if they conferred no resistance
anecdotal
include anectodat database entries in returned results?
Value
data.frame of resistance variants
ojcharles/hsvdrg documentation built on Jan. 19, 2021, 2:02 p.m.
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Description Usage Arguments Value
View source: R/add_resistance_info.R
Description
Calls resistance for variants provided, joins the variant and resistance tables by mutational change columns. <GENE_A123B>
Usage
1 2 3 4 5 6 | add_resistance_info(
f.dat,
resistance_table,
all_muts = FALSE,
anecdotal = FALSE
)
|
Arguments
f.dat |
intermediate-annotated data.frame |
resistance_table |
the current version of the resistance db in csv format |
all_muts |
when TRUE all variants passed are returned even if they conferred no resistance |
anecdotal |
include anectodat database entries in returned results? |
Value
data.frame of resistance variants
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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