README.md

In oliviasabik/GTExIdConverter: GTExIdConverter converts GTEx variant ID to rsIDs.

GTExIdConverter

This package was developed in order to convert GTEx variant IDs, which have the format chr_pos_allele1_allele2_build, to rsIDs. It uses reference data from the GTEx Project

example:

(1) Converting one GTEx ID

input:

GTExIdConvert("6_31186208_A_G_b37")

output:

          variant_id rs_id
1 6_31186208_A_G_b37 rs28360994

(2) translating multiple GTEx IDs (note: must all be from the same chromosome)

input:

ids = c("10_64851_AT_A_b37", "10_61803062_T_G_b37")
GTExIdConvert(variant_ids = ids)

output:

           variant_id rs_id 
1 10_61803062_T_G_b37 rs1002442
2   10_64851_AT_A_b37 rs548882871

oliviasabik/GTExIdConverter documentation built on July 8, 2019, 1:37 a.m.