upload_studies: Upload 'FieldBookApp' data or studies from HIDAP to...

In omarbenites/fbcheck: Web Interface for Data Quality and Processing

Description

Plant breeders' tasks involve the collection, curation and preservation of field data. The FieldBookApp mobile application provide mobile-based data collection. Then, researchers curate all this information in HIDAP (online and offline); and subsequently, they will upload each dataset to SweetPotatoBase (a SolGenomics Database). The latter mentioned is performed through the Breeding API (BrAPI) (see https://brapi.docs.apiary.io).

Usage

upload_studies(dbname = "sweetpotatobase",
  urltoken = "https://sweetpotatobase.org/brapi/v1/token",
  urlput = "https://sweetpotatobase.org/brapi/v1/observations",
  user = "obenites", password = ";c8U:G&z:X", dfr)

Arguments

dbname	character Database name. Currently, it only works with SOL genomics databases.
urltoken	character BRAPI call URL to login in Sol Genomic databases.
urlput	character BRAPI call to PUT URL to studies.
user	character User name
password	character Password
dfr	data.frame Fieldbook data collected by FieldBookApp.

Author(s)

Omar Benites

omarbenites/fbcheck documentation built on Oct. 22, 2019, 4:56 p.m.