gitter.batch: Process a batch set of plate images

In omarwagih/gitter: Quantification of Pinned Microbial Cultures

Process a batch set of plate images

Description

This function will process a directory or list of images in a batch. You can also use this function to process images with sparse to empty rows/columns using a reference image.

Usage

gitter.batch(image.files, ref.image.file = NULL, verbose = "l", ...)

Arguments

image.files	Directory containing images OR a character vector of image paths.
ref.image.file	Specifies path to a reference image, which will be used to grid images specified in image.files.
verbose	See parameters in gitter.
...	Additional parameters passed to gitter

Value

gitter.batch does not return any values. DAT and gridded files are saved to their respective directories.

Examples

# Processing image using reference image
# This image would typically fail to process, since its missing several rows
f = system.file("extdata", "sample_dead.jpg", package="gitter")
# We will use this image to successfully process the above image
f.ref = system.file("extdata", "sample.jpg", package="gitter")
# Process
gitter.batch(f, f.ref)

# Remember: output files by default are saved to your working directory

omarwagih/gitter documentation built on Feb. 6, 2023, 12:08 p.m.