Man pages for ome/rOMERO-gateway
OMERO R Gateway

addROIsAdd ROIs (Point, Ellipse or Rectangle) to an Image x, y ->...
addROIs-Image-methodAdd ROIs (Point, Ellipse or Rectangle) to an Image x, y ->...
attachDataframeAttaches a dataframe to an OME object
attachDataframe-OMERO-methodAttaches a dataframe to an OME object
attachFileAttach a file to an OME object
attachFile-OMERO-methodAttach a file to an OME object
availableDataframesGet the dataframes (name/id/annotationID) attached to an OME...
availableDataframes-OMERO-methodGet the dataframes (name/id/annotationID) attached to an OME...
castCasts a general OMERO object into its proper type, e. g....
cast-OMERO-methodCasts a general OMERO object into its proper type, e. g....
connectConnect to an OMERO server
connect-OMEROServer-methodConnect to an OMERO server
Dataset-classDataset
deleteDeletes an OME object
deleteFileDelete a file attached to an OME object
deleteFile-OMERO-methodDelete a file attachend to an OME object
delete-OMERO-methodDeletes an OME object
describeDataframeDescribe a dataframe attached to an OME object
describeDataframe-OMERO-methodDescribe a dataframe attached to an OME object
disconnectDisconnect from an OMERO server
disconnect-OMEROServer-methodDisconnect from an OMERO server
getAnnotationsGet annotations attached to an OME object. Type, Namespace,...
getAnnotations-OMERO-methodGet annotations attached to an OME object. Type, Namespace,...
getAnnotations-OMEROServer-methodGet annotations attached to an OME object. Type, Namespace,...
getChannelNamesGet the channel names of an Image
getChannelNames-Image-methodGet the channel names of an Image
getColumnGet the column index of the specific well
getColumn-Well-methodGet the column index of the specific well
getContextGet the current SecurityContext
getContext-OMEROServer-methodGet the current SecurityContext
getDatasetsGet all datasets of the logged in user
getDatasets-OMEROServer-methodGet all datasets of the logged in user
getDatasets-Project-methodGet all datasets of a project
getGatewayGet the reference to the Java Gatway
getGateway-OMEROServer-methodGet the reference to the Java Gatway
getGroupContextGet the current group context
getGroupContext-OMEROServer-methodGet the current group context
getImagesGet all images of a container (Dataset, Project, Screen,...
getImages-Dataset-methodGet all images of a dataset
getImages-Plate-methodGet all images of a plate
getImages-Project-methodGet all images of a project
getImages-Screen-methodGet all images of a screen
getImages-Well-methodGet the fields of the specific well
getOMEROIDGet the ID of the OME object
getOMEROID-OMERO-methodGet the ID of the OME object
getOMEROTypeGet the type of the OME object
getOMEROType-OMERO-methodGet the type of the OME object
getPixelValuesGet the pixel values of an Image. An error will be thrown if...
getPixelValues-Image-methodGet the pixel values of an Image. An error will be thrown if...
getPlatesGet all plates of the logged in user
getPlates-OMEROServer-methodGet all plates of the logged in user
getPlates-Screen-methodGet the plates of the specific screen
getProjectsGet all projects of the logged in user
getProjects-OMEROServer-methodGet all projects of the logged in user
getROIsGet the ROIs (Point, Ellipse or Rectangle) of an Image x, y...
getROIs-Image-methodGet the ROIs (Point, Ellipse or Rectangle) of an Image x, y...
getRowGet the row index of the specific well
getRow-Well-methodGet the row index of the specific well
getScreensGet all screens of the logged in user
getScreens-OMEROServer-methodGet all screens of the logged in user
getThumbnailGet the thumbnail for an Image (as JPEG)
getThumbnail-Image-methodGet the thumbnail for an Image (as JPEG)
getUserGet the current user. This is either the logged in user or...
getUser-OMEROServer-methodGet the current user. This is either the logged in user or...
getWellsGet the wells of the specific plate
getWells-Plate-methodGet the wells of the specific plate
Image-classImage
length-Well-methodGet the number of fields
loadCSVLoad a CSV file from the server
loadCSV-OMEROServer-methodLoad a CSV file from the server
loadDataframeLoad a dataframe attached to an OME object
loadDataframe-OMERO-methodLoad a dataframe attached to an OME object
loadObjectLoad an object from the server
loadObject-OMEROServer-methodLoad an object from the server
OMERO-classOME remote object class This is basically a wrapper around...
OMEROServer-classOMEROServer class Provides access to an OMERO server
Plate-classPlate
Project-classProject
Screen-classScreen
searchForSearch for OMERO objects
searchFor-OMEROServer-methodSearch for OMERO objects
setGroupContextSet a different group context
setGroupContext-OMEROServer-methodSet a different group context
sudoSudo (act as another user)
sudo-OMEROServer-methodSudo (act as another user)
Well-classWell
ome/rOMERO-gateway documentation built on Nov. 5, 2023, 9:29 a.m.