shinyepico-package: shinyÉPICo: a graphical and interactive pipeline to analyze...
In omorante/shinyepico: ShinyÉPICo
shinyepico-package R Documentation
shinyÉPICo: a graphical and interactive pipeline to analyze Illumina DNA Methylation Arrays
Description
ShinyÉPICo is a web interface based on Shiny that makes it easy to do differentially methylated positions (DMP) and differentially methylated regions (DMR) analysis from Illumina EPIC or 450k DNA methylation arrays. This program allows following a standard pipeline of normalization (with minfi package), model creation and statistical analysis (with limma package), and DMR calculation (with mCSEA package) with different options in each step and plots to be able to choose properly. Moreover, you can select different options in the final heatmap and download an RMarkdown report with all the steps chosen.
Details
The package contains a vignette that describe throughly its features and options.
omorante/shinyepico documentation built on May 11, 2023, 7:21 p.m.
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| shinyepico-package | R Documentation |
shinyÉPICo: a graphical and interactive pipeline to analyze Illumina DNA Methylation Arrays
Description
ShinyÉPICo is a web interface based on Shiny that makes it easy to do differentially methylated positions (DMP) and differentially methylated regions (DMR) analysis from Illumina EPIC or 450k DNA methylation arrays. This program allows following a standard pipeline of normalization (with minfi package), model creation and statistical analysis (with limma package), and DMR calculation (with mCSEA package) with different options in each step and plots to be able to choose properly. Moreover, you can select different options in the final heatmap and download an RMarkdown report with all the steps chosen.
Details
The package contains a vignette that describe throughly its features and options.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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