Man pages for openanalytics/ganalyse
Easy Analysis of RNASeq DE
| as.dgelist | Convert to a 'DGEList' object |
| as.eset | Convert objects to an 'ExpressionSet' object |
| as.eset_map | Detailed 'ExpressionSet' object |
| construct_contrasts | Construct 'contrasts' matrix for comparison |
| construct_design | Construct design matrix |
| density_plot | Density plots of count data facetted by groups |
| edger_dge | Using 'edger_dge' for 'raw' counts |
| ganalyse | ganalyse: Easy Analysis of Genomics Data |
| gather_counts | Gather counts from 'fpkm' or 'raw' object |
| limma_dge | Using 'limma_dge' for 'raw' and 'fpkm' counts |
| rnaseq | Create an RNASeq experiment object |
| show_counts | Display all counts in a rectangular format |
| test_ganalyse | Run a set of tests |
| volcano_plot | Volcano plot for DGE analysis |
| write_dge | Write top table results to file. |
