test_ganalyse: Run a set of tests

In openanalytics/ganalyse: Easy Analysis of RNASeq DE

Description

Runs a set of tests to check if ganalyse is working correctly.

Usage

test_ganalyse(verbose = FALSE, pkg = "pkg", silent = FALSE)

Arguments

verbose	If TRUE sets ganalyse_verbose to TRUE for the duration of the tests.
pkg	Root directory name under which all package content (ex: DESCRIPTION, src/, R/, inst/ etc..) resides.
silent	Logical, default FALSE. When TRUE it will not raise error on in case of test fails.

Details

Runs a series of tests. These can be used to see features and examples of usage, too. Running test_ganalyse will tell you the full location of the test file(s) to open.

Value

When silent equals to TRUE it will return TRUE if all tests were successful. FALSE otherwise. If silent equals to FALSE it will return TRUE if all tests were successful. Error otherwise.

See Also

rnaseq, gather_counts show_counts limma_dge edger_dge construct_design construct_contrasts write_dge as.dgelist as.eset volcano_plot density_plot

Examples

## Not run: 
ganalyse:::test_ganalyse()

## End(Not run)

openanalytics/ganalyse documentation built on May 24, 2019, 2:25 p.m.