extract_summary_tables: Extract all summary tables for a particular sample
In openanalytics/ggfastqc: Generate Summary Plots of FastQC Reports
Description
Usage
Arguments
Value
Description
NOTE: For internal use only.
This is the workhorse that powers fastqc. Given a sample and
path, extract_summary_tables extracts all summary statistics
and returns them as a list of data.tables.
Usage
1
extract_summary_tables(doc, sample, pair, group)
Arguments
doc
The file corresponding to that sample read in
as such (using readLines).
sample
Sample name.
pair
Read pair.
group
Group / condition this sample belongs to.
Value
A list of data.tables.
openanalytics/ggfastqc documentation built on May 24, 2019, 2:27 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value
Description
NOTE: For internal use only.
This is the workhorse that powers fastqc. Given a sample and
path, extract_summary_tables extracts all summary statistics
and returns them as a list of data.tables.
Usage
1 | extract_summary_tables(doc, sample, pair, group)
|
Arguments
doc |
The file corresponding to that |
sample |
Sample name. |
pair |
Read pair. |
group |
Group / condition this sample belongs to. |
Value
A list of data.tables.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.