Man pages for openpharma/simaerep
Find Clinical Trial Sites Under-Reporting Adverse Events
| aggr_duplicated_visits | Aggregate duplicated visits. |
| check_df_visit | Integrity check for df_visit. |
| eval_sites | Evaluate sites. |
| exp_implicit_missing_visits | Expose implicitly missing visits. |
| get_config | Get Portfolio Configuration |
| get_ecd_values | Get empirical cumulative distribution values of pval or... |
| get_legend | replace cowplot::get_legend, to silence warning Multiple... |
| get_pat_pool_config | Configure study patient pool by site parameters. |
| get_portf_perf | Get Portfolio Performance |
| get_site_mean_ae_dev | Get site mean ae development. |
| get_visit_med75 | Get visit_med75. |
| is_orivisit | is orivisit class |
| is_simaerep | is simaerep class |
| max_rank | Calculate Max Rank |
| orivisit | create orivisit object |
| p_adjust_bh_inframe | benjamini hochberg p value correction using table operations |
| pat_aggr | Aggregate visit to patient level. |
| pat_pool | Create a study specific patient pool for sampling |
| pipe | Pipe operator |
| plot_dots | Plots AE per site as dots. |
| plot.simaerep | plot AE under-reporting simulation results |
| plot_sim_example | Plot simulation example. |
| plot_sim_examples | Plot multiple simulation examples. |
| plot_study | Plot ae development of study and sites highlighting at risk... |
| plot_visit_med75 | Plot patient visits against visit_med75. |
| poiss_test_site_ae_vs_study_ae | Poisson test for vector with site AEs vs vector with study... |
| prep_for_sim | Prepare data for simulation. |
| prob_lower_site_ae_vs_study_ae | Calculate bootstrapped probability for obtaining a lower site... |
| prune_to_visit_med75_inframe | prune visits to visit_med75 using table operations |
| purrr_bar | Execute a purrr or furrr function with a progress bar. |
| simaerep | Create simaerep object |
| simaerep_inframe | simulate in dataframe |
| sim_after_prep | Start simulation after preparation. |
| sim_inframe | Calculate prob_lower for study sites using table operations |
| sim_scenario | simulate single scenario |
| sim_sites | Calculate prob_lower and poisson.test pvalue for study sites. |
| sim_studies | Simulate studies. |
| sim_test_data_patient | simulate patient ae reporting test data |
| sim_test_data_portfolio | Simulate Portfolio Test Data |
| sim_test_data_study | simulate study test data |
| sim_ur | simulate under-reporting |
| sim_ur_scenarios | Simulate Under-Reporting Scenarios |
| site_aggr | Aggregate from visit to site level. |
| with_progress_cnd | Conditional 'with_progress'. |
