NEWS.md

In openpharma/staged.dependencies: Install R packages from Particular Git Branches

staged.dependecies 0.3.1.9001

Enhancements

• Added functions to set and remove general level of messaging as option variable verbose_level_staged.deps.
• Added argument_convention.R with default parameter definitions.

Miscellaneous

• Replaced internal function that checks directory existence with assertion from checkmate when there is no prefix.

staged.dependecies 0.3.1

• Enhanced support of subdirectories for gitlab.

staged.dependecies 0.3.0

• Support subdirectories in configuration.
• Remove renv files and clean the project in that regard.

staged.dependecies 0.2.8

• Updated code for changes in tidyselect 1.2.0.
• Fixed issue with storage directory being overwritten if set by user.
• Updated copying of config file so it doesn't fail if file already exists.

staged.dependencies 0.2.7

• Fixed a bug whereby the cache file for packages with compiled code was not reset after installation thereby dependency_table failed on a 2nd run.

staged.dependencies 0.2.6

• Fixed bug whereby renv did not recognize internal dependencies already installed.

staged.dependencies 0.2.5

• Added renv_files element into dependency_structure object to capture (in JSON) the renv.lock files from internal dependencies for future processing. The renv_profile argument to dependency_table allows you to choose which renv profile to include if not using the default one.
• Use renv::install to install external dependencies if inside an renv environment so that the renv cache is used

staged.dependencies 0.2.4

Bugfixes

• Fixed error where package actions (i.e. check, build) were skipped.

staged.dependencies 0.2.3

Breaking changes

• Soft deprecated direction = c("upstream", "downstream"), now use direction = "all".
• dry_install and dry_install_and_check arguments have both been renamed dry.
• dependency_packages, downstream_packages and packages_to_process arguments have all been renamed package_list.
• local_repos argument to dependency_table defaults to NULL if project_type is "repo@host".
• install_deps_app now takes projects from remote rather than local directory, which allows different ref to be used. See example for more details. It also does not allow local_repos argument.
• Removed upgrade staged.dependencies package addin.

New feature and improvements

• staged.dependencies can handle only having access to part of the internal dependency graph.
• install_deps_app allows repo, host and ref to be configured by users.
• Created addin to install current project's dependencies alongside current project.
• get_all_external_dependencies now returns the vector of external packages ordered by install order and the core R packages are not included.

Other improvements

• Added a NEWS.md file to track changes to the package.
• upgrade argument of remotes::install_deps to choose whether to install external dependencies is now exposed (and default is never). For example, setting upgrade to always will update all external dependencies giving an up-to-date environment.
• Set default R CMD check args to be --no-multiarch --with-keep.source --install-tests.

Bugfixes

• Allow a remote other than origin.
• install_external_deps argument to install_deps_app is now respected.
• Fix bug when calling check_downstream after install_deps whereby incorrect error was shown saying sha has changed.
• Fallback branch for repositories can now be specified and is not hard-coded as main.
• check_downstream will not stop on first package error but will run on all expected packages and all failures are output.
• More gracefully handles error in install_deps_app.

openpharma/staged.dependencies documentation built on Aug. 27, 2023, 10:17 a.m.