Man pages for oriolarques/GEGVIC
A workflow to analyse Gene Expression, Genetic Variations and Immune cell Composition of tumour samples using Next Generation Sequencing data.
| auto_rep | auto_rep |
| ge_annot | ge_annot |
| ge_diff_exp | ge_diff_exp |
| ge_gsea | ge_gsea |
| ge_pca | ge_pca |
| ge_single | ge_single |
| ge_volcano | ge_volcano |
| gv_extr_mut_sig | gv_extr_mut_sig |
| gv_mut_load | gv_mut_load |
| gv_mut_signatures | gv_mut_signatures |
| gv_mut_summary | gv_mut_summary |
| ic_deconv | ic_deconv |
| ic_plot_comp_celltypes | ic_plot_comp_celltypes |
| ic_plot_comp_samples | ic_plot_comp_samples |
| ic_raw_to_tpm | ic_raw_to_tpm |
| ic_score | ic_score |
| module_ge | module_ge |
| module_gv | module_gv |
| module_ic | module_ic |
| preprocess_ge_counts | preprocess_ge_counts |
| preprocess_ge_meta | preprocess_ge_meta |
