clust_group_terms: clust_group_terms
In oriolarques/GSEAmining: Make Biological Sense of Gene Set Enrichment Analysis Outputs
View source: R/clust_group_terms.R
clust_group_terms R Documentation
clust_group_terms
Description
Takes the output of clust_groups, a data frame , and process
it to obtain the enrichment of terms in gene sets names within each cluster.
The output is used in the functions gm_enrichterms and gm_enrichreport.
Usage
clust_group_terms(cg)
Arguments
cg
A data frame output from the GSEAmining cluster_groups function.
Value
A tibble with four variables (Cluster, Enrichment, monogram, n).
Examples
data(genesets_sel)
gs.cl <- gm_clust(genesets_sel)
clust.groups <- clust_groups(genesets_sel, gs.cl)
clust.groups.wordcloud <- clust_group_terms(clust.groups)
oriolarques/GSEAmining documentation built on June 27, 2023, 11:31 p.m.
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View source: R/clust_group_terms.R
| clust_group_terms | R Documentation |
clust_group_terms
Description
Takes the output of clust_groups, a data frame , and process it to obtain the enrichment of terms in gene sets names within each cluster. The output is used in the functions gm_enrichterms and gm_enrichreport.
Usage
clust_group_terms(cg)
Arguments
cg |
A data frame output from the GSEAmining cluster_groups function. |
Value
A tibble with four variables (Cluster, Enrichment, monogram, n).
Examples
data(genesets_sel)
gs.cl <- gm_clust(genesets_sel)
clust.groups <- clust_groups(genesets_sel, gs.cl)
clust.groups.wordcloud <- clust_group_terms(clust.groups)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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