plot_activity_period: Plot activity and periods

In oslerinhealth/actigraph.sleepr: Detect Periods of Sleep and Non-Wear from 'ActiGraph' Data

Description

Plot activity values as a time series and periods as polygons.

Usage

plot_activity_period(
  agdb,
  periods,
  act_var,
  start_var,
  end_var,
  color = "black",
  fill = "#525252",
  ncol = NULL,
  nrow = NULL
)

Arguments

agdb	A tibble (tbl) of activity data (at least) an epochlength attribute.
periods	A tibble of periods with at least two columns start_var and end_var.
act_var	The activity variable (unquoted) to plot on the y-axis.
start_var	The variable (unquoted) which indicates when the time periods start.
end_var	The variable (unquoted) which indicates when the time periods end.
color	Activity line color.
fill	Polygon fill color.
ncol	Number of rows and columns. Relevant only if the activity data is grouped.
nrow	Number of rows and columns. Relevant only if the activity data is grouped.

Examples

data("gtxplus1day")

sub_gt3x <- gtxplus1day %>%
  dplyr::filter(timestamp <= lubridate::as_datetime("2012-06-27 18:00:00"))
# Detect sleep periods using Sadeh as the sleep/awake algorithm
# and Tudor-Locke as the sleep period algorithm
periods_sleep <- sub_gt3x %>%
  collapse_epochs(60) %>%
  apply_cole_kripke() %>%
  apply_tudor_locke(min_sleep_period = 60)

plot_activity_period(
  sub_gt3x, periods_sleep, axis1,
  in_bed_time, out_bed_time
)

oslerinhealth/actigraph.sleepr documentation built on May 25, 2021, 1:06 p.m.