create_batch_aligned_data: Create the binned data after piecewise linear warping

In oslerinhealth/spotgear: Subset Profiling and Organizing Tools for Gel Electrophoresis Autoradiography in R

Description

Create the binned data after piecewise linear warping

Usage

create_batch_aligned_data(dat_binned_list, score_mat_peak_list, query_id,
  ref_id, bp, score_thres)

Arguments

dat_binned_list	A list of data each being the binned data
score_mat_peak_list	A list of score matrix with peak locations filled with numeric values
query_id	The gel number that is to be aligned to the reference gel
ref_id	The number of the reference gel
bp	The break points that binned the smoothed data into bins.
score_thres	The score threshold above or equal to which we call peak candidate bins.

Value

We can name the results dat_binned_batch_aligned_list

oslerinhealth/spotgear documentation built on May 25, 2021, 10:38 p.m.