API for osmose-model/osmose2R
Utilities to analize OSMOSE outputs within R.

Global functions
F_msy Source code
aggregatebyFreq Source code
aggregatebySize Source code
bySpecies Source code
calculateClimatology Source code
calculateFluxDistribution Source code
calculateMigrationFlux Source code
calculatePlanktonAccessibility Source code
calculateSeasonalDistribution Source code
calculateSelectivity Source code
countMapsArea Source code
countOnes Source code
createOsmoseMaps Source code
dummyProxy Source code
errorReadingOutputs Source code
formatCaA Source code
formatCaL Source code
gaussianFlux Source code
getAverageMortality Source code
getCatchability Source code
getFishingByMonth Source code
getFishingByYear Source code
getFishingMortality Source code
getFluxDistribution Source code
getGrowthParameters Source code
getInputConf Source code
getJavaExec Source code
getJavaOptions Source code
getKey Source code
getLarvalByYear Source code
getLarvalMortality Source code
getLength Source code
getMigrationDistributionParameters Source code
getMigrationFlux Source code
getMigrationLength Source code
getModelName Source code
getMortality Source code
getMortalityDeviation Source code
getOsmoseJar Source code
getOsmoseParameters Source code
getParameters Source code
getPlanktonAccessibility Source code
getSelectivity Source code
getSelectivityParameters Source code
getSizeSpectrum Source code
getSpNo Source code
getValues Source code
getVar Source code
getVar.osmose Source code
getmfrow Source code Source code
guessSeparator Source code
interpolateParameters Source code
isHarvested Source code
linearFlux Source code
linearProxy Source code
loadOsmoseParameters Source code
logProxy Source code
logisticProxy Source code
logisticShift Source code
makeTransparent Source code
modelA Source code
modelB Source code
newTimeSteps Source code
niceSeq Source code
nterpolateParameters Source code
num3 Source code
osmose2R Man page Man page Source code
osmose2R-package Man page
osmose2R.v3r0 Source code
osmose2R.v3r1 Source code
osmose2R.v3r2 Source code
osmoseGrowth Source code Source code
osmoseGrowthInv Source code
plot.osmose Source code
plot.osmose.abundance Source code
plot.osmose.biomass Source code
plot.osmose.meanSize Source code
plot.osmose.meanSizeCatch Source code
plot.osmose.meanTL Source code
plot.osmose.meanTLCatch Source code
plot.osmose.yield Source code
plot.osmose.yieldN Source code
plotAverageBiomass Source code
plotAverageYield Source code
plotBiomass Source code
plotCI Source code
print.osmose Source code
print.summary.osmose Source code
randomSeasonalVariates Source code
readFilesList Source code
readMortalityCsv Source code
readMortalitybyAgeorSizeCsv Source code
readOsmoseCsv Source code
readOsmoseFiles Source code
readOsmoseParameters Source code
read_1D Source code
read_2D Source code
read_2D_ByAgeorSize Source code
read_MortStage Source code
read_MortStagebyAgeorSize Source code
refine.season Source code
regimeShift Source code
removeZeros Source code
replicateParameter Source code
reshapeOsmoseTable Source code
reshapeOsmoseTableByAgeorSize Source code
rewriteOutputs Source code
runOsmose Source code
seasonalCycle Source code
selectivity.edge Source code
selectivity.equilibrium Source code
selectivity.lnorm Source code
selectivity.log Source code
selectivity.norm Source code
setCalibrationParameters Source code
setFluxBiomass Source code
setInitialFile Source code
setOsmoseMaps Source code
splinePeriodic Source code
splineTrend Source code
strsplit2v Source code
summary.osmose Source code
timeSeriesParameter Source code
updateOsmoseConfiguration Source code
warningReadingOutputs Source code
write.osmose Source code
writeAccesibilityFile Source code
writeFishingFiles Source code
writeInputData Source code
writeLarvalMortalityFiles Source code
writeMaps Source code
writeMigrationFluxFiles Source code
writeOsmoseParameters Source code
writePlanktonAccessibilityFiles Source code
writeSpeciesConf Source code
osmose-model/osmose2R documentation built on June 6, 2017, 1:11 p.m.