manh: Creates a manhattan plot

In oyhel/qqman2: Plots for GWAS

Description

Creates a manhattan plot

Usage

manh(x, SNP = "SNP", CHR = "CHR", BP = "BP", P = "P", build = "b37",
  highlight = F, highlight.snps = NA, highlight.col = "SNP",
  title = Sys.time())

Arguments

x	A data frame with result data
SNP	SNP column in data frame
CHR	Chromosome column in data frame
BP	SNP position column in data frame
P	P-value column in data frame
build	What build to use for plotting (default to 'b37')
highlight	Whether to highlight SNPs (default to FALSE)
highlight.col	Vector containing SNPs to label
title	Title of plot

Value

A manhattan plot (ggplot2 object)

oyhel/qqman2 documentation built on May 21, 2019, 2:26 a.m.