Man pages for oyvble/MPSproto
A Quantitative Model for MPS data with complex stutters
| calcLogLikC_prediction | calcLogLikC_prediction |
| calcLogLikR_prediction | calcLogLikR_prediction |
| calibrateModel | calibrateModel |
| convertBracket2seq | convertBracket2seq |
| convertMotifReps2seq | convertMotifReps2seq |
| createDiagnosticPlots | createDiagnosticPlots |
| deconvolve | deconvolve |
| diagnoseMCMC | diagnoseMCMC |
| doMCMC | doMCMC |
| dpareto | dpareto |
| fitSUMmodel | fitSUMmodel |
| genMPSevidence | genMPSevidence |
| getMarkerEffStat | getMarkerEffStat |
| getMotifReps | getMotifReps |
| getMotifRepsSequences | getMotifRepsSequences |
| getMPSkit | getMPSkit |
| getStutterData | getStutterData |
| getStutteredSequence | getStutteredSequence |
| getStutterExpectations | getStutterExpectations |
| getStutterIndex | getStutterIndex |
| getStutterTypeRule | getStutterTypeRule |
| getUpperLR | getUpperLR |
| gui | gui |
| importMPSfreqs | importMPSfreqs |
| importMPSsample | importMPSsample |
| inferEvidence | inferEvidence |
| inferEvidence2 | inferEvidence2 |
| inferMarkerEfficiency | inferMarkerEfficiency |
| inferNoiseModel | inferNoiseModel |
| inferStutterModel | inferStutterModel |
| insertMissingTrueAlleles | insertMissingTrueAlleles |
| logLiki | logLiki |
| optimizeLik | optimizeLik |
| plotMPS | plotMPS |
| plotTopMPS | plotTopMPS |
| prefit_prediction | prefit_prediction |
| prepareC_prediction | prepareC_prediction |
| prepareData_prediction | prepareData_prediction |
| sample_listToTable | sample_listToTable |
| tableReader | tableReader |
| validMLE | validMLE |
