calcQualLRcomparison: calcQualLRcomparison

In oyvble/casesolver: A software for comparing DNA profiles within cases

calcQualLRcomparison

Description

Function calculating LR using EuroForMix for remaining matches (from Step 1)

Usage

calcQualLRcomparison(
  DBmix,
  DBref,
  matchlist,
  popFreq,
  pC = 0.05,
  maxC = 6,
  useMinK1 = TRUE,
  normalize = FALSE,
  minFreq = NULL,
  maxIter = 5
)

Arguments

DBmix	A list with evidence information [[sample]][[loc]] = list(adata,hdata)
DBref	A (nR x nL) matrix with reference information. LIST not efficient
matchlist	A matrix with overview of what references are matches each of samples (SampleName,Reference)
popFreq	A list of allele frequencies for a given population.
pC	A numeric for allele drop-in probability. Can be a vector.
maxC	Maximum number of contributors possible to assume. Default is 6.
useMinK1	A boolean of whether minimum number of contributors to test should be one.
normalize	A boolean of whether normalization should be applied or not.
minFreq	The freq value included for new alleles. Default NULL is using min.observed in popFreq.
maxIter	Maximum number of iterations for nlm

oyvble/casesolver documentation built on Feb. 26, 2025, 2:05 a.m.