benth.metUI: Benthic Metric Calculation

In p-schaefer/BenthicAnalysistesting: Benthic Analysis with Test Site Anlysis

Benthic Metric Calculation

Description

Calculation of a variety of metrics for determing impairment of Benthic Macroinvertebrate Communities.

Usage

benth.metUI(
  x,
  taxa.sep = ";",
  HBI = NULL,
  CEFI = NULL,
  f.trait = NULL,
  h.trait = NULL
)

Arguments

x	data.frame with sampling events in rows and taxa in columns. No row or column names should be defined
taxa.sep	Character that separates taxa names
HBI	Custom sensitivity values for HBI calculation. Must follow format of data(HBI1,envir = environment())

Value

$Summary.Metrics - Calculated indicator metrics

$Raw.Data - Raw taxon data

$Taxa.List - Concatenated taxon names

$Site.List - Concatenated site names

Examples

data(YKBioData,envir = environment())
benth.met(YKBioData,2,2)

p-schaefer/BenthicAnalysistesting documentation built on Jan. 17, 2024, 7:24 p.m.