StructureReplicate-class: StructureReplicate: An S4 class to results from Structure

Description Slots See Also

Description

This class stores results from the Structure program.

Slots

lnprob

numeric estimated ln probability of the model.

loglik

numeric mean negative loglikelihood of model.

var_loglik

numeric variance in negative loglikelihood of model.

alpha

numeric mean value of alpha.

matrix

matrix population membership probabilities. Each row is an individual. Each column is for a different population.

sample.names

character name of samples.

output

character output file.

log

character log file.

mcmc

data.frame MCMC updates during run.

See Also

StructureReplicate.


paleo13/structurer documentation built on May 24, 2019, 6:01 p.m.