tidypaleo: Tidy Tools for Paleoenvironmental Archives

#' Halifax lakes water chemistry and top/bottom diatom counts
#'
#' A subset of well-labeled, clean diatom count data for 44 Halifax-area (Nova Scotia) lakes,
#' an analysis of which has been published by Ginn et al. (2015).
#'
#' @source
#' Neotoma paleoecology database (<https://www.neotomadb.org>)
#'
#' @references
#' Ginn, Brian K., Thiyake Rajaratnam, Brian F. Cumming, and John P.
#' Smol. "Establishing Realistic Management Objectives for Urban Lakes Using
#' Paleolimnological Techniques: An Example from Halifax Region (Nova Scotia,
#' Canada)." Lake and Reservoir Management 31, no. 2 (April 3, 2015): 92-108.
#' \doi{10.1080/10402381.2015.1013648}.
#'
#' @examples
#' halifax_lakes_plottable
#'
"halifax_lakes_plottable"

#' Keji lakes core diatom counts
#'
#' A subset of well-labeled, clean diatom count data for 3 Keji-area (Nova
#' Scotia) lakes, which form part of the analysis in Ginn et al. (2007).
#'
#' @source Neotoma paleoecology database (<https://www.neotomadb.org>)
#'
#' @references
#' Ginn, Brian K., Brian F. Cumming, and John P. Smol. "Long-Term
#' Lake Acidification Trends in High- and Low-Sulphate Deposition Regions from
#' Nova Scotia, Canada." Hydrobiologia 586, no. 1 (July 1, 2007): 261-75.
#' \doi{10.1007/s10750-007-0644-3}.
#'
#' @examples
#' keji_lakes_plottable
#'
"keji_lakes_plottable"

#' Alta Lake Lead-210 and Carbon-14 Ages
#'
#' The `alta_lake_210Pb_ages` object contains raw depths and ages for Alta
#' Lake (Whistler, British Columbia, Canada) core AL-GC2 (Dunnington et al.
#' 2016; Dunnington 2015). For these values, ages were calculated from Lead-210
#' activities using the constant rate of supply (CRS) model (Appleby and
#' Oldfield 1983). The `alta_lake_14C_ages` object contains one
#' uncalibrated Carbon-14 measurement from the same core.
#' The `alta_lake_bacon_ages` object contains the combined result of the
#' Lead-210 and the Carbon-14 ages as modelled by the rbacon package
#' (Blaauw and Christen 2011).
#'
#' @references
#' Appleby, P. G., and F. Oldfield. "The Assessment of 210Pb Data from Sites
#' with Varying Sediment Accumulation Rates." Hydrobiologia 103, no. 1 (July 1,
#' 1983): 29–35. \doi{10.1007/BF00028424}.
#'
#' Blaauw, Maarten, and J. Andrés Christen. "Flexible Paleoclimate Age-Depth
#' Models Using an Autoregressive Gamma Process." Bayesian Analysis 6, no. 3
#' (September 2011): 457–74. \doi{10.1214/ba/1339616472}.
#'
#' Dunnington, Dewey W., Ian S. Spooner, Chris E. White, R. Jack Cornett, Dave
#' Williamson, and Mike Nelson. "A Geochemical Perspective on the Impact of
#' Development at Alta Lake, British Columbia, Canada." Journal of
#' Paleolimnology 56, no. 4 (November 2016): 315–330.
#' \doi{10.1007/s10933-016-9919-x}.
#'
#' Dunnington, Dewey W. "A 500-Year Applied Paleolimnological Assessment of
#' Environmental Change at Alta Lake, Whistler, British Columbia, Canada." M.Sc.
#' Thesis, Acadia University, 2015.
#' <https://scholar.acadiau.ca/islandora/object/theses:411>.
#'
#' @examples
#' alta_lake_210Pb_ages
#' alta_lake_14C_ages
#' alta_lake_bacon_ages
#'
"alta_lake_210Pb_ages"

#' @rdname alta_lake_210Pb_ages
"alta_lake_14C_ages"

#' @rdname alta_lake_210Pb_ages
"alta_lake_bacon_ages"

#' @rdname alta_lake_210Pb_ages
"alta_lake_geochem"

#' Long Lake Carbon-14 Ages
#'
#' This object contains several uncalibrated Carbon-14 measurements from Long
#' Lake (Nova Scotia-New Brunswick Border Region, Canada) core LL-PC2
#' (Dunnington et al. 2017; White 2012). The `long_lake_bacon_ages` object
#' contains the result of the Carbon-14 ages as
#' modelled by the rbacon package (Blaauw and Christen 2011).
#'
#' @references
#' Blaauw, Maarten, and J. Andrés Christen. "Flexible Paleoclimate Age-Depth
#' Models Using an Autoregressive Gamma Process." Bayesian Analysis 6, no. 3
#' (September 2011): 457–74. \doi{10.1214/ba/1339616472}.
#'
#' Dunnington, Dewey W., Hilary White, Ian S. Spooner, Mark L. Mallory, Chris
#' White, Nelson J. O’Driscoll, and Nic R. McLellan. "A Paleolimnological
#' Archive of Metal Sequestration and Release in the Cumberland Basin Marshes,
#' Atlantic Canada." FACETS 2, no. 1 (May 23, 2017): 440–60.
#' \doi{10.1139/facets-2017-0004}.
#'
#' White, Hilary E. "Paleolimnological Records of Post-Glacial Lake
#' and Wetland Evolution from the Isthmus of Chignecto Region, Eastern Canada."
#' M.Sc. Thesis, Acadia University, 2012.
#' <https://scholar.acadiau.ca/islandora/object/theses:247>.
#'
#' @examples
#' long_lake_14C_ages
#' long_lake_bacon_ages
#' long_lake_plottable
#'
"long_lake_14C_ages"

#' @rdname long_lake_14C_ages
"long_lake_bacon_ages"

#' @rdname long_lake_14C_ages
"long_lake_plottable"

#' Kellys Lake Data
#'
#' Geochemistry measurements and Cladocera counts from Kellys Lake,
#' Cape Breton Island, Nova Scotia, Canada.
#'
#' @rdname kellys_lake
#'
#' @references
#' Joshua Kurek, Ian Spooner, and Dewey Dunnington (unpublished data).
#'
"kellys_lake_cladocera"

#' @rdname kellys_lake
"kellys_lake_geochem"

#' @rdname kellys_lake
"kellys_lake_ages"