Man pages for paodan/funcTools
some useful function tools in practice
| cash-.functionInfo | Using $ sign to access the functions within a functionInfo... |
| cbindList | cbind all elements in a list |
| CheckBiocReports | Check the package reports on Bioconductor |
| clear | Removes the variables from environment |
| createProject | Create a project folder, where it contains "0_RawData",... |
| detachPackages | detach packages |
| detachPackagesAll | detach all packages except basic packages |
| edge2Mat | Convert network edges to adjacency matrix |
| evalPar | Evaluate parameters in one goal in the global environment |
| fastq2dataframe | Read fastq file and convert to a data frame |
| fastq2dataframe_rev | reverse a fastq corresponding data frame to a data.table of... |
| fileNameFactory | A function factory to create a function that is used to... |
| findShortestPath | Find the shortest path |
| firstContinue | The first/last values in a number sequence with a certain... |
| formatN | Add leading zeros |
| funCode | Finding function source code |
| functionInfo-class | Generating functionInfo object |
| functionsCanGetGeneric | non-generic functions that can generate generic using... |
| funDispatch | find dispatched functions for an object |
| funWhich | get the dispatched S3 or S4 method of a function |
| getLoadedCFun | Get the information of loaded C functions/routines in a... |
| hpcInfo | Information of HPC computing nodes |
| hpcInfo2 | The Memory and CPU usage of each node on HPC |
| identicalSlots | Judge if the slots in two S4 objects are identical |
| insideOutList | Make a named list inside out |
| loadAsList | Load data and assign it/them into a list |
| lsAccessibleVariable | list accessible variables of a function |
| lsClass | List all classes in packages |
| makeFilenames | [!+] Convert string into Windows compatible filename |
| makeUniqueNames | Make Unique Names |
| mat2Edge | Adjacency matrix to a data.frame of edges. |
| matrixNew | Generate random/diagonal/zeros/ones Matrix |
| matrixRep | Repeat matrix m by n times |
| mem_used2 | How much memory is presently/maximally used by R? |
| MethodsFunction-class | MethodsFunction-class |
| newObject | An object constructor of an S3 class |
| parfor | parallel computing with a progress bar |
| paste2strings | Paste two strings without a space |
| plotSave | Save a plot |
| print.HpcInfo | print HpcInfo object |
| print.statRes | Print statRes object |
| print.statRes2 | Print statRes2 object |
| pseudoLog | The Signed Pseudo Logarithm |
| qdel | Delete (qdel) of queue jobs. |
| qdel2 | Delete (scancel) of SLURM jobs. |
| qdelAll | Delete (qdel) of job by pattern |
| qdelAll2 | Delete (scancel) of SLURM jobs. |
| qstat | Status (qstat) of my running jobs. |
| qstat2 | checking your own job status on HPC for slurm system |
| qstatAll | Status (qstat) of running jobs of all users. |
| qstatAll2 | checking all users' job status on HPC for slurm system |
| qstatGroupAll | Status (qstat) of running jobs of group members. |
| qstatGroupAll2 | Status (sacct, equivalent to qstat) of running jobs of group... |
| qstatProcess | process the results form qstat command |
| qstatSummary | Summarize qstat results |
| R_currentFramework | The current version of R framework |
| removeSpace | remove multiple spaces to one space |
| renameFiles | rename files |
| R_frameworks | list all R frameworks |
| rQsub | Submit (qsub) R jobs. |
| rQsub2 | Submit (sbatch, like qsub) R jobs. |
| R_switch | Switch R framework version on Mac |
| runC | Run a C function based on C interface from R |
| R_version | Current R version |
| sacct | sacct: checking your own job status on HPC for slurm system |
| sacctAll | sacctAll: checking all users' job status on HPC for slurm... |
| sbatch | sbatch: Submit (sbatch, like qsub) R jobs. |
| scale_colour_Publication | Change discrete colour color of ggplot |
| scale_fill_Publication | Change discrete fill color of ggplot |
| scale_xy_ticks | Change the x and y axis ticks of ggplot |
| scancel | scancel: Delete (scancel) of SLURM jobs. |
| scancelAll | scancelAll: Delete (scancel) of SLURM jobs. |
| selectRows | Select rows from a data frame according to reference IDs |
| setwd2thisFile | Set working directory according to the file with this... |
| slotClass | Obtain class names of slots in an S4 object |
| sortDataframe | Sort data.frame according to multiple columns. |
| strSplit | Split charactors vecotrs and save as a matrix |
| table2matrix | Convert a table object to a matrix |
| theme_Publication | ggplot theme for publication ready Plots |
| theme_transparent | Make the ggplot transparent |
| thisFile | The path, directory and file name of the current (executed)... |
| tidyText | Print text in a tidy way. |
| whereis | Which environment/package(s) is/are a function located in the... |
