| COUPLINGset |
Man page
|
| COUPLINGset-class |
Man page
|
| MEDIPS |
Man page
|
| MEDIPS-package |
Man page
|
| MEDIPS.Bam2GRanges |
Man page
|
| MEDIPS.Bed2Granges |
Man page
|
| MEDIPS.CpGenrich |
Man page
|
| MEDIPS.GenomicCoordinates |
Man page
|
| MEDIPS.addCNV |
Man page
|
| MEDIPS.calibrationCurve |
Man page
|
| MEDIPS.cnv |
Man page
|
| MEDIPS.correlation |
Man page
|
| MEDIPS.couplingVector |
Man page
|
| MEDIPS.createROIset |
Man page
|
| MEDIPS.createSet |
Man page
|
| MEDIPS.diffMeth |
Man page
|
| MEDIPS.exportWIG |
Man page
|
| MEDIPS.getAnnotation |
Man page
|
| MEDIPS.getPositions |
Man page
|
| MEDIPS.mergeFrames |
Man page
|
| MEDIPS.mergeSets |
Man page
|
| MEDIPS.meth |
Man page
|
| MEDIPS.plotCalibrationPlot |
Man page
|
| MEDIPS.plotSaturation |
Man page
|
| MEDIPS.plotSeqCoverage |
Man page
|
| MEDIPS.rms |
Man page
|
| MEDIPS.saturation |
Man page
|
| MEDIPS.selectROIs |
Man page
|
| MEDIPS.selectSig |
Man page
|
| MEDIPS.seqCoverage |
Man page
|
| MEDIPS.setAnnotation |
Man page
|
| MEDIPSroiSet |
Man page
|
| MEDIPSroiSet-class |
Man page
|
| MEDIPSset |
Man page
|
| MEDIPSset-class |
Man page
|
| ROI,MEDIPSroiSet-method |
Man page
|
| adjustReads |
Man page
|
| bin.ROIs |
Man page
|
| bin_number |
Man page
|
| bin_number,MEDIPSroiSet-method |
Man page
|
| bin_size |
Man page
|
| bin_size,MEDIPSset-method |
Man page
|
| chr_lengths |
Man page
|
| chr_lengths,COUPLINGset-method |
Man page
|
| chr_lengths,MEDIPSroiSet-method |
Man page
|
| chr_lengths,MEDIPSset-method |
Man page
|
| chr_names |
Man page
|
| chr_names,COUPLINGset-method |
Man page
|
| chr_names,MEDIPSroiSet-method |
Man page
|
| chr_names,MEDIPSset-method |
Man page
|
| extend |
Man page
|
| extend,MEDIPSroiSet-method |
Man page
|
| extend,MEDIPSset-method |
Man page
|
| genome_CF |
Man page
|
| genome_CF,COUPLINGset-method |
Man page
|
| genome_count |
Man page
|
| genome_count,MEDIPSroiSet-method |
Man page
|
| genome_count,MEDIPSset-method |
Man page
|
| genome_name |
Man page
|
| genome_name,COUPLINGset-method |
Man page
|
| genome_name,MEDIPSroiSet-method |
Man page
|
| genome_name,MEDIPSset-method |
Man page
|
| getGRange |
Man page
|
| getMObjectFromWIG |
Man page
|
| getPairedGRange |
Man page
|
| getTypes |
Man page
|
| matDiff |
Man page
|
| matMax |
Man page
|
| matMean |
Man page
|
| matMin |
Man page
|
| matNnotNA |
Man page
|
| matSd |
Man page
|
| matTtest |
Man page
|
| number_pattern |
Man page
|
| number_pattern,COUPLINGset-method |
Man page
|
| number_regions |
Man page
|
| number_regions,MEDIPSroiSet-method |
Man page
|
| number_regions,MEDIPSset-method |
Man page
|
| path_name |
Man page
|
| path_name,MEDIPSroiSet-method |
Man page
|
| path_name,MEDIPSset-method |
Man page
|
| readRegionsFile |
Man page
|
| rois |
Man page
Man page
|
| rois,MEDIPSroiSet-method |
Man page
|
| sample_name |
Man page
|
| sample_name,MEDIPSroiSet-method |
Man page
|
| sample_name,MEDIPSset-method |
Man page
|
| scanBamToGRanges |
Man page
|
| seq_pattern |
Man page
|
| seq_pattern,COUPLINGset-method |
Man page
|
| setTypes |
Man page
|
| shifted |
Man page
|
| shifted,MEDIPSroiSet-method |
Man page
|
| shifted,MEDIPSset-method |
Man page
|
| show |
Man page
|
| show,COUPLINGset-method |
Man page
|
| show,MEDIPSroiSet-method |
Man page
|
| show,MEDIPSset-method |
Man page
|
| uniq |
Man page
|
| uniq,MEDIPSroiSet-method |
Man page
|
| uniq,MEDIPSset-method |
Man page
|
| window_size |
Man page
|
| window_size,COUPLINGset-method |
Man page
|
| window_size,MEDIPSset-method |
Man page
|
