Files in paravian/nitro
Integration of TNT in R
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/AbstractCharacterMatrix.R
R/AbstractExtension.R
R/AbstractResamplingOptions-class.R
R/AbstractSectorialSearchOptions-class.R
R/BootstrapOptions-class.R
R/BranchBreakingOptions-class.R
R/BranchSupportOptions-class.R
R/BranchSwappingOptions-class.R
R/CommandQueue-class.R
R/ConstraintBaseOptions-class.R
R/ConstraintedSectorialSearchOptions-class.R
R/ContinuousMatrix-class.R
R/DiscreteMatrix-class.R
R/DrivenSearchOptions-class.R
R/ExclusiveSectorialSearchOptions-class.R
R/ImpliedWeightingOptions-class.R
R/JackknifeOptions-class.R
R/MonophylyConstraintOptions-class.R
R/OutputParser-class.R
R/RandomSectorialSearchOptions-class.R
R/RatchetOptions-class.R
R/SymmetricResamplingOptions-class.R
R/TreeAnalysis-class.R
R/TreeAnalysisResults-class.R
R/TreeDriftingOptions-class.R
R/TreeFusingOptions-class.R
R/TreeHybridizingOptions-class.R
R/create_matrix.R
R/create_new_object.R
R/data.R
R/execute_analysis.R
R/new_search_config.R
R/tnt_attach.R
R/tnt_process_start.R
README.md
data/canale_2022.rda
data/raven_2017.rda
man-roxygen/collapse-template.R
man-roxygen/inactive_characters-template.R
man-roxygen/inactive_taxa-template.R
man-roxygen/ordered_characters-template.R
man-roxygen/outgroup-template.R
man-roxygen/weights-template.R
man/AbstractCharacterMatrix.Rd
man/AbstractExtension.Rd
man/AbstractResamplingOptions.Rd
man/AbstractSectorialSearchOptions.Rd
man/BootstrapOptions.Rd
man/BranchBreakingOptions.Rd
man/BranchSupportOptions.Rd
man/BranchSwappingOptions.Rd
man/CommandQueue.Rd
man/ConstrainedSectorialSearchOptions.Rd
man/ConstraintBaseOptions.Rd
man/ContinuousMatrix.Rd
man/DiscreteMatrix.Rd
man/DrivenSearchOptions.Rd
man/ExclusiveSectorialSearchOptions.Rd
man/ImpliedWeightingOptions.Rd
man/JackknifeOptions.Rd
man/MonophylyConstraintOptions.Rd
man/OutputParser.Rd
man/RandomSectorialSearchOptions.Rd
man/RatchetOptions.Rd
man/SymmetricResamplingOptions.Rd
man/TreeAnalysis.Rd
man/TreeAnalysisResults.Rd
man/TreeDriftingOptions.Rd
man/TreeFusingOptions.Rd
man/TreeHybridizingOptions.Rd
man/c.AbstractCharacterMatrix.Rd
man/canale_2022.Rd
man/create_matrix.Rd
man/create_new_object.Rd
man/execute_analysis.Rd
man/new_search_config.Rd
man/print.MultiCharacterMatrix.Rd
man/raven_2017.Rd
man/tnt_attach.Rd
