makeL: Matrix of branch lengths along root-to-tip paths

In pasraia/RRphylo: Phylogenetic Ridge Regression Methods for Comparative Studies

Matrix of branch lengths along root-to-tip paths

Description

This function produces a n * m matrix, where n=number of tips and m=number of branches (i.e. n + number of nodes). Each row represents the branch lengths aligned along a root-to-tip path.

Usage

makeL(tree)

Arguments

tree	a phylogenetic tree. The tree needs not to be ultrametric and fully dichotomous.

Value

The function returns a n * m matrix of branch lengths for all root-to-tip paths in the tree (one per species).

Author(s)

Pasquale Raia, Silvia Castiglione, Carmela Serio, Alessandro Mondanaro, Marina Melchionna, Mirko Di Febbraro, Antonio Profico, Francesco Carotenuto

Examples

data("DataApes")
DataApes$Tstage->Tstage

makeL(tree=Tstage)

pasraia/RRphylo documentation built on Aug. 12, 2024, 8:32 a.m.