Files in patelm9/chariot
chariot Package

.Rbuildignore
.github/.gitignore
.gitignore
CODE_OF_CONDUCT.md
DESCRIPTION
NAMESPACE
NEWS.md R/browse_athena.R R/cache.R R/chariot-package.R R/concept-s4class.R R/concept_set_ancestry.R R/constraints.R R/diagrammer.R R/ds_join.R R/ds_lookup_ucum.R R/ds_process.R R/ds_stage.R R/edges.R R/filter.R R/format.R R/get_name_cluster.R R/helper.R R/hemonc.R R/ho_harmonize.R R/list.R R/locators.R R/logical.R R/loinc.R R/lookup_relationship.R R/lookup_units.R R/lowlevel.R R/metadata.R R/omop.concept-refclass.R R/pivot_isa.R R/query.R R/query_athena.R R/read_sql_template.R
R/read_template.R
R/search-ff.R R/search-utils.R R/sql.R R/string_manipulation.R R/version_key.R R/x_check.R R/x_conn.R R/x_get_test.R R/x_join_for.R R/x_join_on.R R/x_lookup.R R/x_lookup_atc_class_ingredients.R R/x_print_concept_hierarchy.R R/x_print_concept_siblings.R R/x_search.R R/x_search_phrase.R R/x_typewrite.R R/x_utils.R R/x_vocabulary_relationships.R R/z-relationship_classes.R R/zzz.R README.Rmd README.md SECURITY.md
_pkgdown.yml
chariot.Rproj
doc/explore-maps-to-relationship.R doc/explore-maps-to-relationship.Rmd
doc/explore-maps-to-relationship.html
doc/explore-relationships-and-ancestors.R
doc/explore-relationships-and-ancestors.html
doc/explore-relationships-and-ancestors.html.asis
doc/explore-vocabulary-relationships-and-ancestors.R doc/explore-vocabulary-relationships-and-ancestors.Rmd
doc/explore-vocabulary-relationships-and-ancestors.html
doc/harmonizing-hemonc-concepts.R doc/harmonizing-hemonc-concepts.Rmd
doc/harmonizing-hemonc-concepts.html
doc/mapping-to-hemonc.R doc/mapping-to-hemonc.Rmd
doc/mapping-to-hemonc.html
doc/pivot-concept-ancestor.R doc/pivot-concept-ancestor.Rmd
doc/pivot-concept-ancestor.html
doc/pivot-concept-relationships.R doc/pivot-concept-relationships.Rmd
doc/pivot-concept-relationships.html
doc/plot-atc-classification.R doc/plot-atc-classification.Rmd
doc/plot-atc-classification.html
doc/plot-loinc-classification.R doc/plot-loinc-classification.Rmd
doc/plot-loinc-classification.html
doc/setup-drug-strength.R doc/setup-drug-strength.Rmd
doc/setup-drug-strength.html
doc/string-manipulation.R doc/string-manipulation.Rmd
doc/string-manipulation.html
docs/404.html
docs/CODE_OF_CONDUCT.html
docs/SECURITY.html
docs/apple-touch-icon-120x120.png
docs/apple-touch-icon-152x152.png
docs/apple-touch-icon-180x180.png
docs/apple-touch-icon-60x60.png
docs/apple-touch-icon-76x76.png
docs/apple-touch-icon.png
docs/articles/explore-maps-to-relationship.html
docs/articles/explore-relationships-and-ancestors.html
docs/articles/explore-relationships-and-ancestors_files/figure-html/unnamed-chunk-11-1.png
docs/articles/explore-relationships-and-ancestors_files/figure-html/unnamed-chunk-12-1.png
docs/articles/explore-relationships-and-ancestors_files/figure-html/unnamed-chunk-13-1.png
docs/articles/explore-relationships-and-ancestors_files/figure-html/unnamed-chunk-14-1.png
docs/articles/explore-relationships-and-ancestors_files/figure-html/unnamed-chunk-15-1.png
docs/articles/explore-relationships-and-ancestors_files/figure-html/unnamed-chunk-16-1.png
docs/articles/explore-relationships-and-ancestors_files/figure-html/unnamed-chunk-4-1.png
docs/articles/explore-vocabulary-relationships-and-ancestors.html
docs/articles/harmonizing-hemonc-concepts.html
docs/articles/index.html
docs/articles/mapping-to-hemonc.html
docs/articles/pivot-concept-ancestor.html
docs/articles/pivot-concept-relationships.html
docs/articles/setup-drug-strength.html
docs/articles/string-manipulation.html
docs/articles/taxonomy-and-relationships.html
docs/articles/taxonomy-and-relationships_files/crosstalk-1.1.1/css/crosstalk.css
docs/articles/taxonomy-and-relationships_files/crosstalk-1.1.1/js/crosstalk.js
docs/articles/taxonomy-and-relationships_files/crosstalk-1.1.1/js/crosstalk.js.map
docs/articles/taxonomy-and-relationships_files/crosstalk-1.1.1/js/crosstalk.min.js
docs/articles/taxonomy-and-relationships_files/crosstalk-1.1.1/js/crosstalk.min.js.map
docs/articles/taxonomy-and-relationships_files/datatables-binding-0.18/datatables.js
docs/articles/taxonomy-and-relationships_files/datatables-css-0.0.0/datatables-crosstalk.css
docs/articles/taxonomy-and-relationships_files/dt-core-1.10.20/css/jquery.dataTables.extra.css
docs/articles/taxonomy-and-relationships_files/dt-core-1.10.20/css/jquery.dataTables.min.css
docs/articles/taxonomy-and-relationships_files/dt-core-1.10.20/js/jquery.dataTables.min.js
docs/articles/taxonomy-and-relationships_files/dt-ext-buttons-1.10.20/css/buttons.dataTables.min.css
docs/articles/taxonomy-and-relationships_files/dt-ext-buttons-1.10.20/js/buttons.colVis.min.js
docs/articles/taxonomy-and-relationships_files/dt-ext-buttons-1.10.20/js/buttons.flash.min.js
docs/articles/taxonomy-and-relationships_files/dt-ext-buttons-1.10.20/js/buttons.html5.min.js
docs/articles/taxonomy-and-relationships_files/dt-ext-buttons-1.10.20/js/buttons.print.min.js
docs/articles/taxonomy-and-relationships_files/dt-ext-buttons-1.10.20/js/dataTables.buttons.min.js
docs/articles/taxonomy-and-relationships_files/htmlwidgets-1.5.3/htmlwidgets.js
docs/articles/taxonomy-and-relationships_files/jquery-3.5.1/jquery-AUTHORS.txt
docs/articles/taxonomy-and-relationships_files/jquery-3.5.1/jquery.js
docs/articles/taxonomy-and-relationships_files/jquery-3.5.1/jquery.min.js
docs/articles/taxonomy-and-relationships_files/jquery-3.5.1/jquery.min.map
docs/articles/taxonomy-and-relationships_files/jszip-1.10.20/jszip.min.js
docs/articles/taxonomy-and-relationships_files/nouislider-7.0.10/jquery.nouislider.min.css
docs/articles/taxonomy-and-relationships_files/nouislider-7.0.10/jquery.nouislider.min.js
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docs/articles/taxonomy-and-relationships_files/pdfmake-1.10.20/vfs_fonts.js
docs/articles/taxonomy-and-relationships_files/selectize-0.12.0/selectize.bootstrap3.css
docs/articles/taxonomy-and-relationships_files/selectize-0.12.0/selectize.min.js
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/favicon-16x16.png
docs/favicon-32x32.png
docs/favicon.ico
docs/index.html
docs/link.svg
docs/logo.png
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/Rplot001.png
docs/reference/browse_athena.html
docs/reference/cache_query.html
docs/reference/check_concept_id.html
docs/reference/check_vocab_id.html
docs/reference/concept-class.html
docs/reference/concept_id_exists.html
docs/reference/connectAthena.html
docs/reference/connectAthena_ff.html
docs/reference/constraints.html
docs/reference/convenience_functions.html
docs/reference/dcAthena.html
docs/reference/ds_join_on_drug.html
docs/reference/ds_join_on_ingredient.html
docs/reference/ds_lookup_ucum.html
docs/reference/ds_process.html
docs/reference/ds_process_drug_table.html
docs/reference/ds_process_map_table.html
docs/reference/ds_stage.html
docs/reference/ds_stage_unit_fraction.html
docs/reference/ds_stage_value_fraction.html
docs/reference/ds_staged_table_exists.html
docs/reference/exact_phrase_search_ff.html
docs/reference/figures/DESCRIPTION
docs/reference/figures/NAMESPACE
docs/reference/figures/NEWS.md
docs/reference/figures/R
docs/reference/figures/README.md
docs/reference/figures/_pkgdown.yml
docs/reference/figures/data
docs/reference/figures/data-raw
docs/reference/figures/docs
docs/reference/figures/inst
docs/reference/figures/log.md
docs/reference/figures/logo.png
docs/reference/figures/man
docs/reference/figures/pkgdown
docs/reference/filterClassConcepts.html
docs/reference/filterConcept.html
docs/reference/filterConceptClass.html
docs/reference/filterDomain.html
docs/reference/filterHemOnc.html
docs/reference/filterLOINC.html
docs/reference/filterNAACCR.html
docs/reference/filterNebraska.html
docs/reference/filterRxNorm.html
docs/reference/filterSNOMED.html
docs/reference/filterStandardConceptType.html
docs/reference/filterStandardConcepts.html
docs/reference/filterValid.html
docs/reference/filterVocabulary.html
docs/reference/filter_at_all_strip.html
docs/reference/filter_at_any_strip.html
docs/reference/filter_strip.html
docs/reference/get_ancestor_relationships.html
docs/reference/get_cdm_data_dictionary.html
docs/reference/get_concept.html
docs/reference/get_concept_id_fields.html
docs/reference/get_hierarchical_relationships.html
docs/reference/get_name_cluster.html
docs/reference/get_strip.html
docs/reference/get_test_concepts.html
docs/reference/get_test_data.html
docs/reference/get_test_drug_classes.html
docs/reference/get_test_drug_concepts.html
docs/reference/get_vocab_data_dictionary.html
docs/reference/get_vocabulary_ids.html
docs/reference/ho_grep_regimens.html
docs/reference/ho_lookup_antineoplastics.html
docs/reference/ho_lookup_regimen.html
docs/reference/ho_reduce_to_components.html
docs/reference/index.html
docs/reference/is_cached.html
docs/reference/join.html
docs/reference/join_for_ancestor_ids.html
docs/reference/join_for_ancestors.html
docs/reference/join_for_concept_synonym_name.html
docs/reference/join_for_descendant_ids.html
docs/reference/join_for_descendants.html
docs/reference/join_on_concept_code.html
docs/reference/join_on_concept_id.html
docs/reference/join_on_concept_name.html
docs/reference/join_on_concept_synonym_name.html
docs/reference/label_to_strip.html
docs/reference/like_phrase_search_ff.html
docs/reference/list_cdm_table_names.html
docs/reference/list_concept_id_fields.html
docs/reference/list_fields.html
docs/reference/list_table_abbr.html
docs/reference/list_vocab_table_names.html
docs/reference/load_cached_query.html
docs/reference/locatePhrase.html
docs/reference/lookup_atc_class_ingredients.html
docs/reference/lookup_orphan_concepts.html
docs/reference/lookup_relationships.html
docs/reference/lookup_top_ancestors.html
docs/reference/lookup_ucum.html
docs/reference/lookup_ucum_time.html
docs/reference/lookup_upper_limit_ancestors.html
docs/reference/lowLevelCache.html
docs/reference/lowLevelLoadCache.html
docs/reference/make_where_clause.html
docs/reference/map_concept_id.html
docs/reference/merge_label.html
docs/reference/merge_strip.html
docs/reference/ordered_phrase_search_ff.html
docs/reference/pipe.html
docs/reference/prime_concepts.html
docs/reference/print_concept_hierarchy.html
docs/reference/print_concept_siblings.html
docs/reference/process_first_parentheses.html
docs/reference/process_last_parentheses.html
docs/reference/process_longest_words.html
docs/reference/process_map_input_functions.html
docs/reference/process_parentheses.html
docs/reference/process_unique_words.html
docs/reference/process_words.html
docs/reference/queryAncestors.html
docs/reference/queryAthena.html
docs/reference/queryCDM.html
docs/reference/queryCode.html
docs/reference/queryConceptClassRelationships.html
docs/reference/queryConceptId.html
docs/reference/queryDescendants.html
docs/reference/queryRelationships.html
docs/reference/querySynonyms.html
docs/reference/queryVocabularyRelationships.html
docs/reference/rank_word_frequency.html
docs/reference/rank_word_length.html
docs/reference/read_cdm_wiki_table.html
docs/reference/search_code.html
docs/reference/search_ends_with_phrase.html
docs/reference/search_exact_phrase.html
docs/reference/search_like_phrase.html
docs/reference/search_split_phrase.html
docs/reference/search_starts_with_phrase.html
docs/reference/sendAthena.html
docs/reference/strip_to_label.html
docs/reference/tokenized_phrase_search_ff.html
docs/reference/unbox_label.html
docs/reference/unbox_strip.html
docs/reference/unmerge_label.html
docs/reference/unmerge_strip.html
docs/reference/vocab_lookup_interrelation.html
docs/reference/vocab_lookup_intrarelation.html
docs/reference/vocab_lookup_relationships.html
inst/WORDLIST
inst/example/check.R inst/example/format_filter_strip.R inst/example/format_merge.R inst/example/format_unbox.R inst/example/get_name_cluster.R inst/example/get_test.R inst/example/hemonc.R inst/example/join.R inst/example/lookup_atc_class_ingredients.R inst/example/lookup_relationship.R inst/example/print_concept_hierarchy.R inst/example/print_concept_siblings.R inst/example/queryCDM.R inst/example/search_phrase.R inst/example/vocabulary_relationships.R
inst/sql/conceptClassRelationship.sql
inst/sql/hemOncComponentToRegimen.sql
inst/sql/hemOncRegimenToHasAntineoplastics.sql
inst/sql/loadChemiDPlusMetadata.sql
inst/sql/metaoriteCode.sql
inst/sql/queryAncestors.sql
inst/sql/queryLowerPhraseExactSynonym.sql
inst/sql/queryLowerPhraseLikeSynonym.sql
inst/sql/queryPhraseExactSynonym.sql
inst/sql/queryPhraseLikeSynonym.sql
inst/sql/synonyms.sql
inst/sql/vocabularyRelationship.sql
inst/sql/vocabularyTableDDL.sql
inst/sql_constr/whereConceptClassId.sql
inst/sql_constr/whereDomain.sql
inst/sql_constr/whereInvalidReason.sql
inst/sql_constr/whereStandardConcept.sql
inst/sql_constr/whereVocabularyId.sql
inst/version_sql/get_logged_version.sql
inst/version_sql/get_vocabulary_version.sql
logo.png
man/browse_athena.Rd man/cache_query.Rd man/check_concept_id.Rd man/check_vocab_id.Rd man/concept-class.Rd man/concept_id_exists.Rd man/connectAthena.Rd man/connectAthena_ff.Rd man/convenience_functions.Rd man/dcAthena.Rd man/ds_join_on_drug.Rd man/ds_join_on_ingredient.Rd man/ds_lookup_ucum.Rd man/ds_process.Rd man/ds_process_drug_table.Rd man/ds_process_map_table.Rd man/ds_stage.Rd man/ds_stage_unit_fraction.Rd man/ds_stage_value_fraction.Rd man/ds_staged_table_exists.Rd man/exact_phrase_search_ff.Rd man/fetched_via.Rd
man/figures/DESCRIPTION
man/figures/NAMESPACE
man/figures/NEWS.md
man/figures/R
man/figures/README.md
man/figures/_pkgdown.yml
man/figures/data
man/figures/data-raw
man/figures/docs
man/figures/inst
man/figures/log.md
man/figures/logo.png
man/figures/man
man/figures/pkgdown
man/filterClassConcepts.Rd man/filterConcept.Rd man/filterConceptClass.Rd man/filterDomain.Rd man/filterHemOnc.Rd man/filterLOINC.Rd man/filterNAACCR.Rd man/filterNebraska.Rd man/filterRxNorm.Rd man/filterSNOMED.Rd man/filterStandardConceptType.Rd man/filterStandardConcepts.Rd man/filterValid.Rd man/filterVocabulary.Rd man/filter_at_all_strip.Rd man/filter_at_any_strip.Rd man/filter_strip.Rd man/get_VersionKey.Rd man/get_ancestor_relationships.Rd man/get_cdm_data_dictionary.Rd man/get_concept.Rd man/get_concept_id_fields.Rd man/get_constraints.Rd man/get_hierarchical_relationships.Rd man/get_name_cluster.Rd man/get_strip.Rd man/get_test_concepts.Rd man/get_test_data.Rd man/get_test_drug_classes.Rd man/get_test_drug_concepts.Rd man/get_vocab_data_dictionary.Rd man/get_vocabulary_ids.Rd man/ho_grep_regimens.Rd man/ho_lookup_antineoplastics.Rd man/ho_lookup_regimen.Rd man/ho_reduce_to_components.Rd man/is_cached.Rd man/join.Rd man/join_for_ancestor_ids.Rd man/join_for_ancestors.Rd man/join_for_concept_synonym_name.Rd man/join_for_descendant_ids.Rd man/join_for_descendants.Rd man/join_on_concept_code.Rd man/join_on_concept_id.Rd man/join_on_concept_name.Rd man/join_on_concept_synonym_name.Rd man/label_to_strip.Rd man/like_phrase_search_ff.Rd man/list_cdm_table_names.Rd man/list_concept_id_fields.Rd man/list_fields.Rd man/list_table_abbr.Rd man/list_vocab_table_names.Rd man/load_cached_query.Rd man/locatePhrase.Rd man/lookup_atc_class_ingredients.Rd man/lookup_orphan_concepts.Rd man/lookup_relationships.Rd man/lookup_relationships_bw_vocab.Rd man/lookup_top_ancestors.Rd man/lookup_ucum.Rd man/lookup_ucum_time.Rd man/lookup_upper_limit_ancestors.Rd man/lookup_vocab_relationships.Rd man/lowLevelCache.Rd man/lowLevelLoadCache.Rd man/make_where_clause.Rd man/map_concept_id.Rd man/merge_label.Rd man/merge_strip.Rd man/ordered_phrase_search_ff.Rd man/pipe.Rd man/prime_concepts.Rd man/print_concept_hierarchy.Rd man/print_concept_siblings.Rd man/process_first_parentheses.Rd man/process_last_parentheses.Rd man/process_longest_words.Rd man/process_map_input_functions.Rd man/process_parentheses.Rd man/process_unique_words.Rd man/process_words.Rd man/queryAncestors.Rd man/queryAthena.Rd man/queryCDM.Rd man/queryCode.Rd man/queryConceptClassRelationships.Rd man/queryConceptId.Rd man/queryDescendants.Rd man/queryRelationships.Rd man/querySynonyms.Rd man/queryVocabularyRelationships.Rd man/query_athena.Rd man/query_relationships.Rd man/rank_word_frequency.Rd man/rank_word_length.Rd man/read_cdm_wiki_table.Rd man/search_code.Rd man/search_ends_with_phrase.Rd man/search_exact_phrase.Rd man/search_like_phrase.Rd man/search_split_phrase.Rd man/search_starts_with_phrase.Rd man/sendAthena.Rd man/strip_to_label.Rd man/tokenized_phrase_search_ff.Rd man/unbox_label.Rd man/unbox_strip.Rd man/unmerge_label.Rd man/unmerge_strip.Rd man/vocab_lookup_intrarelation.Rd
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vignettes/.build.timestamp
vignettes/.gitignore
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vignettes_asis/explore-relationships-and-ancestors.Rmd
patelm9/chariot documentation built on Feb. 19, 2022, 11:29 a.m.