get_name_cluster: Get a Name Cluster

In patelm9/chariot: chariot Package

Description

A 'Name Cluster' is a character vector of all the unique labels associated with a concept, including labels derived from 'Maps to' relationships from the Concept Relationship table.

Usage

get_name_cluster(
  concept_obj,
  vocab_schema = "omop_vocabulary",
  conn,
  conn_fun = "connectAthena()",
  cache_only = FALSE,
  skip_cache = FALSE,
  override_cache = FALSE,
  render_sql = TRUE,
  verbose = TRUE,
  sleepTime = 1
)

Arguments

concept_obj

May be an integer or a 'concept' class object.

Examples

library(chariot)
library(tidyverse)

conn <- connectAthena()


# Drug Domain
concept_obj <- get_concept(conn = conn,
                           concept_id = 1308216)
concept_obj
get_name_cluster(conn = conn,
                 concept_obj = concept_obj)


# Cancer Condition Domain
concept_obj <- get_concept(conn = conn,
                           concept_id = 4187868)
concept_obj
get_name_cluster(conn = conn,
                 concept_obj = concept_obj)

# Chronic Disease Domain
concept_obj <- get_concept(conn = conn,
                           concept_id = 319835)
concept_obj
get_name_cluster(conn = conn,
                 concept_obj = concept_obj)

# Measurement Domain
concept_obj <- get_concept(conn = conn, concept_id = 4298431)
concept_obj
get_name_cluster(conn = conn,
                 concept_obj = concept_obj)


dcAthena(conn = conn)

patelm9/chariot documentation built on Feb. 19, 2022, 11:29 a.m.