README.md

In paternogbc/anura: A Global Dataset of Anuran Species Advertisement Call

anura

A Global Dataset of Anuran Species Advertisement Call

Installation

You can install the anura package from GitHub with:

# install.packages("devtools")
devtools::install_github("paternogbc/anura")

Help

In R, documentation for anura dataset can be accessed with the standard help command (e.g., ?anura.data and ?anura.tree).

For a online description of the dataset, see reference page

Example

How to load and use anura.data?

library(anura)

# check anura data.frame
knitr::kable(head(anura.data))

| fam | sp | environment | DF | SVL | | :------------- | :------------------------- | :---------- | ---: | ----: | | Allophrynidae | Allophryne_ruthveni | still | 4645 | 20.60 | | Alsodidae | Alsodes_nodosus | flowing | 1140 | 75.85 | | Alytidae | Alytes_cisternasii | flowing | 1491 | 41.00 | | Arthroleptidae | Cardioglossa_occidentalis | flowing | 4100 | 27.30 | | Arthroleptidae | Leptopelis_argenteus | still | 1750 | 45.00 | | Arthroleptidae | Leptopelis_bocagii | still | 600 | 52.00 |

# fit a model
fit <- lm(log10(DF) ~ environment, anura.data)

# make a plot
library(ggplot2)
ggplot(anura.data, aes(y = log10(DF), 
                       x = environment)) +
  geom_jitter(width = .02, size = .2) +
  geom_violin(alpha = .6, fill = gray(.7), color = NA) +
  geom_boxplot(aes(fill = environment),
               alpha = .3, width = .15,
               outlier.color = NA,
               show.legend = F) +
  theme_light(base_size = 20)

paternogbc/anura documentation built on July 12, 2019, 7:52 p.m.